Locus 2650

Sequence ID 2R_DroMel_CAF1
Location 9,348,005 – 9,348,113
Length 108
Max. P 0.999027
window4362

overview

Window 2

Location 9,348,005 – 9,348,113
Length 108
Sequences 5
Columns 108
Reading direction forward
Mean pairwise identity 93.69
Mean single sequence MFE -27.67
Consensus MFE -25.42
Energy contribution -25.22
Covariance contribution -0.20
Combinations/Pair 1.14
Mean z-score -2.12
Structure conservation index 0.92
SVM decision value 3.33
SVM RNA-class probability 0.999027
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9348005 108 + 20766785
CCAUACUAUAUAGCCAUGAGAUCCCUAUGAUACAUUUUCAACGGAUUUCCGCGAAAUUCCGGCGGAAGUGGAGCUGCUAGCAUGGCUGAUAUACAUAAAUCUUCCUAA
......((((((((((((((((((...(((.......)))..))))))).((....(((((.(....))))))......)))))))).)))))............... ( -27.20)
>DroSec_CAF1 18121 108 + 1
CCAUACUAUAUAGCCAAGAGAUCCCUAAGAUACAUUUUCAACGGAUUUCCGCGAAAUUCCGGUGGAAGUGGAGCUGCUAGCAUGGCUGAUAUACAUAAAUCUUCCUAA
......((((((((((................((((((((.((((((((...)))).)))).))))))))..((.....)).))))).)))))............... ( -25.20)
>DroSim_CAF1 19791 108 + 1
CCAUACUAUAUAGCCAUGAGAUCCCUAAGAUACAUUUUCAACGGAUUUCCGCGAAAUUCCGGCGGAAGUGGAGCUGCUAGCAUGGCUGAUAUACAUAAAUCUUCCUAA
......((((((((((((.........((...(((((((..((((((((...)))).))))..)))))))...)).....))))))).)))))............... ( -27.04)
>DroEre_CAF1 18445 106 + 1
CCAUACUAUACAGCCAUG--AUCCCUAAGAAACAUUUUCAACGGAUUUCCACGAAAUUCUGGCGGAAGUGGAGCUGCUAGCAUGGCUGAUAUACAUAAAUCUUCCUAA
......((((((((((((--.......((...(((((((..((((((((...)))).))))..)))))))...)).....)))))))).))))............... ( -27.90)
>DroYak_CAF1 21346 104 + 1
CCAUACUAUGCAGCCAUG--AUCCCUAAGAAACACUUUCAUCGGAUUUCCACGAAAUUCUGGCGGAAGUGGAGCUGCUAGCAUGGCUGAUAU--AUAAAUCUUCCUAA
......((((((((((((--.......((...(((((((..((((((((...)))).))))..)))))))...)).....)))))))).)))--)............. ( -31.00)
>consensus
CCAUACUAUAUAGCCAUGAGAUCCCUAAGAUACAUUUUCAACGGAUUUCCGCGAAAUUCCGGCGGAAGUGGAGCUGCUAGCAUGGCUGAUAUACAUAAAUCUUCCUAA
......((((((((((((.........((...(((((((..((((((((...)))).))))..)))))))...)).....)))))))).))))............... (-25.42 = -25.22 +  -0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:24 2006