Locus 2647

Sequence ID 2R_DroMel_CAF1
Location 9,344,293 – 9,344,383
Length 90
Max. P 0.797238
window4358

overview

Window 8

Location 9,344,293 – 9,344,383
Length 90
Sequences 6
Columns 109
Reading direction forward
Mean pairwise identity 73.41
Mean single sequence MFE -26.97
Consensus MFE -11.96
Energy contribution -11.60
Covariance contribution -0.36
Combinations/Pair 1.40
Mean z-score -1.97
Structure conservation index 0.44
SVM decision value 0.61
SVM RNA-class probability 0.797238
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9344293 90 + 20766785
AUGGGAUGACAAUGUAAUUACUUGAGUGGCCAGGAAAUUGGCUGUUCA--AAUUCAAAGUGAAGUCACCGCG--G--GGGUCGAAAAGU-------------GGGUCUA
...(((((((...........(((((..(((((....)))))..))))--).(((.....)))))).((((.--.--..........))-------------)))))). ( -24.90)
>DroSec_CAF1 14491 90 + 1
AUGGGAUGACAAUGUAAUUACUUGAGUGGCCAGGAAAUUGGCUGUUCA--AAUUCAAAGUGAAGUCACCGCG--G--CGGUCGCAGAGG-------------GGUUCUA
.(((((((((...........(((((..(((((....)))))..))))--).(((.....)))))).((...--(--(....))...))-------------.)))))) ( -26.10)
>DroSim_CAF1 15005 90 + 1
AUGGGAUGACAAUGUAAUUACUUGAGUGGCCAGGAAAUUGGCUGUUCA--AAUUCAAAGUGAAGUCACCGCG--G--GGGUCGCAGAGG-------------GGGUCUA
...((.((((...........(((((..(((((....)))))..))))--).(((.....)))))))))...--.--((..(.(....)-------------.)..)). ( -26.00)
>DroEre_CAF1 14645 103 + 1
AUGGGAUGACAAUGUAAUUACUUGAGUGGCCAGGAAAUUGGCUGUUUA--AGCCCAAAGUGAAGUCACAGCG--G--GCCUCCAAAAGGGGGGUCUAAAAUGGGGUCUA
.......(((..........((((((..(((((....)))))..))))--))((((..(((....)))...(--(--((((((.....))))))))....))))))).. ( -39.00)
>DroYak_CAF1 17466 102 + 1
AUGGGAUGACAAUGUAAUUACUUGAGUGGCCAGGAAAUUGGCUGUUUA--AACUCAAAGUGAAGCCACAGCG--G--GCGUUCAAAAGGGGG-UUCAAUAGGGGGUCUA
...((((..(...........(((((..(((((....)))))..))))--).(((....(((((((......--)--)).))))....))).-........)..)))). ( -27.10)
>DroAna_CAF1 14267 94 + 1
AUG--UUCAAAAGCCAAUUACUUAAGUGCUUGGGUAAUUGCAUAUUUAGGAAUUUUAAGUGGGAUUACUAUCCAGAUAUGUCAAAGGAU-------------GGUUCUU
..(--(((....((.((((((((((....)))))))))))).(((((((.....))))))))))).(((((((............))))-------------))).... ( -18.70)
>consensus
AUGGGAUGACAAUGUAAUUACUUGAGUGGCCAGGAAAUUGGCUGUUCA__AAUUCAAAGUGAAGUCACCGCG__G__GGGUCGAAAAGG_____________GGGUCUA
.......(((............((((..(((((....)))))..))))..........(((....)))....................................))).. (-11.96 = -11.60 +  -0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:19 2006