| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 9,332,438 – 9,332,539 |
| Length | 101 |
| Max. P | 0.662484 |
| Location | 9,332,438 – 9,332,539 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 82.33 |
| Mean single sequence MFE | -30.08 |
| Consensus MFE | -21.82 |
| Energy contribution | -21.77 |
| Covariance contribution | -0.06 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.73 |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.662484 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9332438 101 + 20766785 ----UCAUAAUCUUAAUGGAAUUCCCAACUGCAGAAAGCAACUCAGAGAUCCUGGUGACCGCCAGUCAUGCCGUUUUCCACAAUGAGGGCGGCAAGACUGCACCG ----.....(((((..(((.....)))..(((.....))).....)))))...((((.....(((((.((((((((((......)))))))))).))))))))). ( -32.50) >DroSec_CAF1 2729 101 + 1 ----UCAUUAUCUUAAUGGAAUUCCCAACUGCAGAAAGCAACUCAGAGAUCCUGGUGACCGCCAGUCAUGCUGUUUUCCACAAUGAGGGCGGCAAGACUGCACCG ----.............(((.(((.....(((.....))).....))).))).((((.....(((((.((((((((((......)))))))))).))))))))). ( -30.30) >DroSim_CAF1 2753 101 + 1 ----UCAUAAUCUCACUUGUCUUUCCAACUGCAGAAAGCAACUCAGAGAUCCUGGUGACCGCCAGUCAUGCCGUUUUCCACAAUGAGGGCGGCAAGACUGCACCG ----.....(((((..(((.(((((........))))))))....)))))...((((.....(((((.((((((((((......)))))))))).))))))))). ( -34.60) >DroEre_CAF1 2806 105 + 1 AGCACUAUAAUCAUGCUGGACUUCCCAACUGCAGAGAGCAACUCAGAGAUCCUGGUGACCGCCAGCCAUGCCGUCUUCCACAAUGAGGGCGGCAAGACCGCGCCG .((...........(((((...(((((....(.(((.....))).)......))).))...)))))..((((((((((......)))))))))).....)).... ( -32.20) >DroYak_CAF1 5475 105 + 1 AACAACAUAAUCACACUUGACUUCCCCACUGCAGAGAGCAACUCAGAGAUCCUGGUGACCGCCAGUCAUGCCGUCUUCCACAAUGAGGGCGGCAAGACGGCACCG ..........((((.(..((.(((.....(((.....))).....))).))..)))))..(((.(((.((((((((((......)))))))))).)))))).... ( -34.40) >DroPer_CAF1 3100 93 + 1 ----UAAUCGUCUCUUUGUCA--------UUUAGAAAGCAACUCUGAGAUCCUUGUAACUGCCAGUCAUGCCAUCUUCCAUAAUGAGGGCGGCAAAUCCGCACCG ----..............(((--------((.(((..(((...(((................)))...)))..))).....)))))((((((.....)))).)). ( -16.49) >consensus ____UCAUAAUCUCACUGGAAUUCCCAACUGCAGAAAGCAACUCAGAGAUCCUGGUGACCGCCAGUCAUGCCGUCUUCCACAAUGAGGGCGGCAAGACUGCACCG .....................................((............(((((....)))))...((((((((((......)))))))))).....)).... (-21.82 = -21.77 + -0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:15 2006