| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 9,320,949 – 9,321,047 |
| Length | 98 |
| Max. P | 0.693297 |
| Location | 9,320,949 – 9,321,047 |
|---|---|
| Length | 98 |
| Sequences | 3 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 70.79 |
| Mean single sequence MFE | -30.43 |
| Consensus MFE | -20.93 |
| Energy contribution | -21.16 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.16 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.33 |
| SVM RNA-class probability | 0.693297 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9320949 98 - 20766785 CCACGCCUAGUACUUGUACCCGCCGGCACCACCAGCACCACCGCCGCCGCCGCCACGAGCUCCUGGCUGUGGUCCCUGCGGGUACGUGGCCUCGCCCU ....((..((..(.(((((((((.((.(((((..((......)).......((((.(....).)))).))))).)).))))))))).)..)).))... ( -36.80) >DroWil_CAF1 263926 92 - 1 UCAUUUUUAAUAUUUAUAACCACCGGCACCACC---ACCACCGC---CGCCUCCACGUUGACCGGGCACUGGUCCCUGUGGAUACUGAGCCUCUCCCU (((....................((((......---......))---))..((((((..((((((...))))))..))))))...))).......... ( -20.50) >DroAna_CAF1 195249 89 - 1 CCAAGCCUAGUACUUGUAACCACCGGCC---------CCACCGCCACCGCCGCCUCGGGCACCCGGCUGCGGUCCCUGGGGGAACUGGGCCUCGCCCU ....(((((((.((.((....)).))((---------(((.....(((((.(((..((....))))).)))))...)))))..)))))))........ ( -34.00) >consensus CCAAGCCUAGUACUUGUAACCACCGGCACCACC___ACCACCGCC_CCGCCGCCACGAGCACCCGGCUGUGGUCCCUGCGGGUACUGGGCCUCGCCCU ....((((((((((((((...((((((...............)))...((((...........))))...)))...))))))))))))))........ (-20.93 = -21.16 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:07 2006