Locus 2631

Sequence ID 2R_DroMel_CAF1
Location 9,292,171 – 9,292,282
Length 111
Max. P 0.725287
window4338

overview

Window 8

Location 9,292,171 – 9,292,282
Length 111
Sequences 6
Columns 111
Reading direction forward
Mean pairwise identity 82.64
Mean single sequence MFE -32.87
Consensus MFE -23.70
Energy contribution -25.39
Covariance contribution 1.69
Combinations/Pair 1.04
Mean z-score -1.97
Structure conservation index 0.72
SVM decision value 0.41
SVM RNA-class probability 0.725287
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9292171 111 + 20766785
CCAUCCCACGGUGGCCACGCAGCUGCAUCAUCAGGUCCUACUUCCAAAGCAGCAGCACCACCACCAUCAGCAGCAACACCACGGACUUGUGGCCACUGUCCUUCCCGCGGA
...(((((((((((((((...(((((.......((........))...((....)).............)))))....(....)....))))))))))).......).))) ( -32.71)
>DroSec_CAF1 177008 111 + 1
CCAUCCCACGGUGGCCACGCAGCUGCAUCACCAGGUCCUACUCCCAAAGCCGCAGCACCACCACCAUCAGCAGCAACACCACGGACUUGUGGCCACUGUCCUUCCGGCGGA
.....(((((((((((((...(((((.......((........))...((....)).............)))))....(....)....)))))))))))((....)).)). ( -33.40)
>DroSim_CAF1 163148 111 + 1
CCAUCCCACGGUGGCCACGCAGCUGCAUCACCAGGUCCUACUCCCAAAGCCGCAGCACCACCACCAUCAGCAGCAACACCACGGACUUGUGGCCACUGUCCUUCCGGCGGA
.....(((((((((((((...(((((.......((........))...((....)).............)))))....(....)....)))))))))))((....)).)). ( -33.40)
>DroEre_CAF1 163166 105 + 1
UCAUCCCACGGUGGCCACGCAGCAGCAUCACCAGCUCCUGCUCCCAAAGCCGCACCACCACC------ACCAGCAGCACCACGGACUUGUGGCCACUGUCCUUCCGGCGGA
.....(((((((((((((((((.(((.......))).))))(((....((.((.........------....)).)).....)))...)))))))))))((....)).)). ( -36.12)
>DroYak_CAF1 161603 105 + 1
UCAUCCCACGGUGGCCACGCAGCUGCAUAACCAGGUCCUUCUCCCAAAGCCGCACCACCACC------AGCAGCAACACCACGGACUUGUGGCCACUGUCCUUCCGGCGGA
.....(((((((((((((((....))......((((((..........((.((.........------.)).))........)))))))))))))))))((....)).)). ( -32.97)
>DroAna_CAF1 168525 93 + 1
CCAUCCCACGGUGGCCACGC---UGCAU---------------CCACAUCCGCAUCAGCACCACCUGCACGAGCCCAGCCACAAUCUGGUGGCCACCGUCCUGCCGGCCGA
.......(((((((((((((---(((..---------------........))....(((.....)))...))).(((.......))))))))))))))............ ( -28.60)
>consensus
CCAUCCCACGGUGGCCACGCAGCUGCAUCACCAGGUCCUACUCCCAAAGCCGCAGCACCACCACCAUCAGCAGCAACACCACGGACUUGUGGCCACUGUCCUUCCGGCGGA
.......(((((((((((((....))......((((((..........((.((................)).))........)))))))))))))))))............ (-23.70 = -25.39 +   1.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:00 2006