| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 9,285,778 – 9,285,874 |
| Length | 96 |
| Max. P | 0.895572 |
| Location | 9,285,778 – 9,285,874 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 77.75 |
| Mean single sequence MFE | -29.75 |
| Consensus MFE | -22.23 |
| Energy contribution | -21.95 |
| Covariance contribution | -0.28 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.52 |
| Structure conservation index | 0.75 |
| SVM decision value | 0.99 |
| SVM RNA-class probability | 0.895572 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9285778 96 + 20766785 ----------------CCCCGAACACACACAAAACUCAAGUGGCGCGAAAAUUCGAGGCACAGUUGCAACAGCAGCGCGCAAGCGUGCGGUU-UUC-CUCCACAGUU---UUUC-CAG- ----------------..............((((((...((((.(.(((((((....((((.(((((....)))))((....))))))))))-)))-).))))))))---))..-...- ( -29.70) >DroVir_CAF1 237364 96 + 1 ----------------CUGCAAGCACACACAAAACUGAAGUGGCGCGAAAAUUUGAGGCACAGUUGCAGCAACAGCGCGCAAGCGUGCGGUU-UUC-CUCCA--AGU---UUGAAAAGG ----------------((.(((((.....((....))...(((.(.(((((((....((((.((((......))))((....))))))))))-)))-).)))--.))---)))...)). ( -25.40) >DroGri_CAF1 197195 97 + 1 ----------------CUGCAAGCACACACAAAACUGAAGUGGCGCGAAAAUUUGAGGCACAGUUGCAAGAGCAGCGCGCAAGCGUGCGGUUUUUC-CUCCA--GUU---UUGAGCAGG ----------------((((..((.(.(((.........)))).)).((((((.(((((((.(((((....)))))((....))))))((....))-))).)--)))---))..)))). ( -32.80) >DroWil_CAF1 219984 100 + 1 ----------------CCCAAAACACACACAAAACUCAAGUGGCGCGAAAAUUCGAGGCACAGUUGCAACAGCAGCGCGCAAGCGUGCGGUU-UUUCAUCGCCUGCCUUCUCUC-CAA- ----------------.........................(((((((.........((((.(((((....)))))((....))))))((..-..)).))))..))).......-...- ( -26.50) >DroMoj_CAF1 257193 83 + 1 ----------------CAGCCAACACACACAAAACUGAAGUGGCGCGAAAAUUCGAGGCACAGUUGCUGCAGCAGCGCGCAAGCGUGCGGUU-UUC-CUCU------------------ ----------------..((((...((........))...))))..(((((((....((((.(((((....)))))((....))))))))))-)))-....------------------ ( -26.50) >DroPer_CAF1 135917 114 + 1 AGCCCCGAGCCCGGAGCCCCAAACACACACAAAACUCAAGUGGCGCGAAAAUUCGAGGCACAGUUGCAACAGCAGCGCGCAAGCGUGCGGUU-UUCCCUCCACAGUU---UUCCGCAG- .((.(((....))).))..........(((.........)))(((.(((((((.(((((((.(((((....)))))((....))))))((..-..)))))...))))---))))))..- ( -37.60) >consensus ________________CCCCAAACACACACAAAACUCAAGUGGCGCGAAAAUUCGAGGCACAGUUGCAACAGCAGCGCGCAAGCGUGCGGUU_UUC_CUCCA__GUU___UUGC_CAG_ .....................(((.(.(((.........(((.(.(((....))).).))).(((((....)))))((....))))).))))........................... (-22.23 = -21.95 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:58 2006