Locus 2614

Sequence ID 2R_DroMel_CAF1
Location 9,212,731 – 9,212,823
Length 92
Max. P 0.715951
window4309

overview

Window 9

Location 9,212,731 – 9,212,823
Length 92
Sequences 5
Columns 107
Reading direction forward
Mean pairwise identity 85.33
Mean single sequence MFE -28.36
Consensus MFE -21.92
Energy contribution -22.40
Covariance contribution 0.48
Combinations/Pair 1.11
Mean z-score -1.73
Structure conservation index 0.77
SVM decision value 0.39
SVM RNA-class probability 0.715951
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9212731 92 + 20766785
AUG-------AUAACUUUCUUAGUUAUAAGUUGGUUUUUCCUGCGAGUGUCCCUAUGACUCACAGUUUAGCAUGACAUUUGCAGGCUGACAGGAA--------GUGC
...-------((((((.....))))))..((..(.....((((((((((((.(((.(((.....))))))...)))))))))))))..)).....--------.... ( -26.40)
>DroSec_CAF1 106362 92 + 1
ACG-------AUAACUUUCUUAGUUAUAAGUUGGUUUUUCCUGCGAGUGUCCCUGCGACUCACAGUUUAGCAUGACAUUUGCAGGCUGACAGGAA--------GUGC
...-------((((((.....))))))..((..(.....((((((((((((..((((((.....)))..))).)))))))))))))..)).....--------.... ( -28.10)
>DroSim_CAF1 89419 92 + 1
ACG-------AUAACUUUCUUAGUUAUAAGUUGGUUUUUCCUGCGAGUGUGCCUGCGACUCACAGUUUAGCAUGACAUUUGCAGGCUGACAGGAA--------GUGC
...-------((((((.....))))))..((..(.....(((((((((((.(.((((((.....)))..))).)))))))))))))..)).....--------.... ( -26.20)
>DroEre_CAF1 92224 107 + 1
GUCGCAAAAAGUAACUUUCUCAGUUAUAAGUUGGUUUUUCCGGCGAGUGUCCCUCCGACUAACAGUUUAGCAUGACAUUUGCAGGCUGACAGGAAGUGCGGAAGUGC
((((((((((.((((((..........)))))).)))))...(((((((((.....(((.....)))......)))))))))..)).))).....(..(....)..) ( -27.70)
>DroYak_CAF1 88671 97 + 1
ACUGUGC--UGAAACCUUCUUAGUUAUAAGUUGGUUUUUCCUGCGAGUGUCCUUGCGACUAACAGUUUAGCACGACAUUUGCAGGCUGACAGGAU--------GUGC
.((((..--.((((((..((((....))))..)))))).((((((((((((..((((((.....)))..))).))))))))))))...))))...--------.... ( -33.40)
>consensus
ACG_______AUAACUUUCUUAGUUAUAAGUUGGUUUUUCCUGCGAGUGUCCCUGCGACUCACAGUUUAGCAUGACAUUUGCAGGCUGACAGGAA________GUGC
..........((((((.....))))))..((..(.....((((((((((((.(((.(((.....))))))...)))))))))))))..))................. (-21.92 = -22.40 +   0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:33 2006