| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 9,192,487 – 9,192,577 |
| Length | 90 |
| Max. P | 0.522828 |
| Location | 9,192,487 – 9,192,577 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 78.54 |
| Mean single sequence MFE | -31.07 |
| Consensus MFE | -16.80 |
| Energy contribution | -17.55 |
| Covariance contribution | 0.75 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.73 |
| Structure conservation index | 0.54 |
| SVM decision value | -0.02 |
| SVM RNA-class probability | 0.522828 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9192487 90 + 20766785 AAUUGCUUCAAGUGGCUCAGCUGGCUGCUGGCU---GCUGGCAACUUUCGGAGCGUAAUGUCCUGAGCCAAG---GAUCCAGGACCCU-------GGCAAUUC ....(((((.((..((.((((.....)))))).---.))(....)....)))))((...((((((..(....---)...))))))...-------.))..... ( -32.20) >DroGri_CAF1 87158 92 + 1 AAUUGCUUCAAGUGGCGCAGCUGGC-------U---GACAGCAGCUUUGAAAGCAUUAUGCGCU-AGCAAAUGUUGGUCCAGGACCCUAAAGACAGCCAAGGA .......((...((((...((((..-------.---..)))).((((((..((((((.(((...-.)))))))))((((...)))).))))).).))))..)) ( -25.80) >DroSec_CAF1 85990 90 + 1 AAUUGCUUCAAGUGGCUCAGCUGGCUGCUGGCU---GCUGGCAACUUUCGGGGCGUAAUGUCCUGAGCCAAG---GAUCCAGGACCCU-------GGCAAUUC ..(((((...((..((.((((.....)))))).---.)))))))...(((((((.....)))))))((((.(---(........)).)-------)))..... ( -35.60) >DroSim_CAF1 69128 83 + 1 AAUUGCUUCAAGUGGCUCAGCUGGC-------U---GCUGGCAACUUUCGGGGCGCAAUGUCCUGAGCCAAG---GAUCCAGGACCCU-------GGCAAUUC ((((((.((...(((((((((....-------.---)))))......(((((((.....)))))))))))..---))..(((....))-------))))))). ( -30.00) >DroEre_CAF1 73221 75 + 1 AAUUGCUUCAAGUGGCUCAGCUGGCUG----------CUGGCAACUUUCGAGGCGUAAUGUCCUGAGCC-----------AGGACCCU-------GCCAAUUC ....(((((((((.((.((((.....)----------))))).))))..)))))(((..((((((...)-----------)))))..)-------))...... ( -27.00) >DroYak_CAF1 68138 93 + 1 AAUUGCUUCAAGUGGCUCAGCUGGCUGCUGGCUGCUGCUGGCAACUUUCGAGGCGUAAUGUCCUGAGCCAAG---GAUCCAGGACUCU-------GCCAAUUC ..(((((...((..((.((((.....))))))..))...))))).......((((....((((((..(....---)...))))))..)-------)))..... ( -35.80) >consensus AAUUGCUUCAAGUGGCUCAGCUGGCUG_____U___GCUGGCAACUUUCGAGGCGUAAUGUCCUGAGCCAAG___GAUCCAGGACCCU_______GCCAAUUC ...((((((((((.((.((((...............)))))).))))..))))))....((((((..............)))))).................. (-16.80 = -17.55 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:25 2006