Locus 261

Sequence ID 2R_DroMel_CAF1
Location 1,653,469 – 1,653,589
Length 120
Max. P 0.952501
window558

overview

Window 8

Location 1,653,469 – 1,653,589
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 91.98
Mean single sequence MFE -32.83
Consensus MFE -30.10
Energy contribution -30.60
Covariance contribution 0.50
Combinations/Pair 1.00
Mean z-score -1.99
Structure conservation index 0.92
SVM decision value 1.42
SVM RNA-class probability 0.952501
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 1653469 120 - 20766785
ACAGUGCAAAAAGAAAAGAGAAAACAUUUGCGCAACACAUUCGCUAGUGAUUCUCGGUGCUGAUUUUGCUGAUAUAUUUGCGCUGGCAUGAAAGGCUCUCGUGCACACUCAUGUGCACCU
.(((((((((.......(((((..((((.(((.........))).)))).)))))...((.......)).......)))))))))((.......))....(((((((....))))))).. ( -33.10)
>DroSec_CAF1 39443 108 - 1
ACAGUGCAAAAAGAAAAGAGAAAACAUU---GCAACACAUUCGCUAGUGAUUCUCGGUGCUGAUUUCGCUGAUAUAUUUGCGCUG---------UCUCUCGUGCACACUCAUGUGCACCU
((((((((((.......(((((..((((---((.........)).)))).)))))((((.......))))......)))))))))---------).....(((((((....))))))).. ( -31.40)
>DroSim_CAF1 36342 111 - 1
ACAGUGCAAAAAGAAAAGAGAAAACAUUUGCGCAACACAUUCGCUAGUGAUUCUCGGUGCUGAUUUUGCUGAUAUAUUUGCGCUG---------GCUCUCGUGCACACUCAUGUGCACCU
.(((((((((.......(((((..((((.(((.........))).)))).)))))...((.......)).......)))))))))---------......(((((((....))))))).. ( -33.00)
>DroEre_CAF1 43011 119 - 1
ACAGUGCAAAAAGAAAAGAGAAAACAUUUGCGC-ACACAUUCGCUAGUGAUUCUCGGUGCUGAUUUUGCUGAUAUAUUUGCGCUGGCAUGGAAGACUCUCGUGCACACUCAUGUGCACCU
.(((((((((.......(((((..((((.(((.-.......))).)))).)))))...((.......)).......)))))))))...............(((((((....))))))).. ( -33.80)
>consensus
ACAGUGCAAAAAGAAAAGAGAAAACAUUUGCGCAACACAUUCGCUAGUGAUUCUCGGUGCUGAUUUUGCUGAUAUAUUUGCGCUG_________GCUCUCGUGCACACUCAUGUGCACCU
.(((((((((.......(((((..((((.(((.........))).)))).)))))...((.......)).......)))))))))...............(((((((....))))))).. (-30.10 = -30.60 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:55 2006