Locus 2604

Sequence ID 2R_DroMel_CAF1
Location 9,180,368 – 9,180,473
Length 105
Max. P 0.648664
window4291

overview

Window 1

Location 9,180,368 – 9,180,473
Length 105
Sequences 6
Columns 108
Reading direction reverse
Mean pairwise identity 83.85
Mean single sequence MFE -42.91
Consensus MFE -29.72
Energy contribution -30.39
Covariance contribution 0.67
Combinations/Pair 1.19
Mean z-score -2.36
Structure conservation index 0.69
SVM decision value 0.24
SVM RNA-class probability 0.648664
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9180368 105 - 20766785
GUUGAAGUGCGGCCAGAAGUAUGCGGGG-UAGGCGGUUGG--GUUGGAGGUGUGGGGCACGGCUCCAGGCGAAAAGCAAGACAAUGUGCCUCACCUGUGCUUCAACAC
(((((((..(((((((..((.(((...)-)).))..))))--.........((((((((((.......((.....)).......)))))))))))))..))))))).. ( -42.84)
>DroSec_CAF1 64706 105 - 1
GUUGAAGUGCGGCCAGAAGUAUGCGGGG-UGGGCGGUUGG--UUUGGAGGUGUGGGGCACGACUCCAGGCGAAAAGCAAGACAAUGUGCCUCACCUGUGCUUCAACAC
(((((((..((((((((....(((....-...))).....--)))))....((((((((((.......((.....)).......)))))))))))))..))))))).. ( -42.44)
>DroSim_CAF1 57045 105 - 1
GUUGAAGUGCGGCCAGAAGUAUGCGGGG-UGGGCGGUUGG--GCUGGAGGUGUGGGGCACGACUCCAGGCGAAAAGCAAGACAAUGUGCCUCACCUGUGCUUCAACAC
(((((((..(.((.........)).(((-((((((((((.--.((((((.((((...)))).))))))((.....))....)))).)))).))))))..))))))).. ( -44.10)
>DroEre_CAF1 61433 107 - 1
GUUGAAGUGCGGCCAGAAGUAUGUGGGG-CGGGUGGUUGGUGGUGGAAGGCGUGGGGCACGGCCCCAGGCGAAAGGCAAGACAAUGUGCCUCGCCUGUGCUUCAACAC
(((((((..(((..........((((((-((.((.(((..((.(.....((.((((((...)))))).))....).)).))).)).)))))))))))..))))))).. ( -48.40)
>DroYak_CAF1 56075 100 - 1
GUUGAAGUGCGGCCAGAAGUAUGCGGGG-UGGUUGCUUGG-------AGGUGUGGGACACGGCCCCAGGCGAAGAGCAAGACAAUGUGCCUCACCUGCGCUUCAACAC
((((((((((((...((.(((((..(.(-(..((((((((-------.((((((...))).)))))))))))...))....)..))))).))..)))))))))))).. ( -41.50)
>DroAna_CAF1 59095 94 - 1
ACUGAAGUGCGGCCAG-AGUAUGCGGGAGUGCCAAGUUGG-------G-----GGCACAUGCCCCCCGGC-AACGGCAAGACAAUGUUCCUCACCUGUGCUUCACCAC
..(((((..(((...(-((...(((....((((.....((-------(-----(((....)))))).(..-..)))))......)))..)))..)))..))))).... ( -38.20)
>consensus
GUUGAAGUGCGGCCAGAAGUAUGCGGGG_UGGGCGGUUGG__GUUGGAGGUGUGGGGCACGGCCCCAGGCGAAAAGCAAGACAAUGUGCCUCACCUGUGCUUCAACAC
((((((((((((((((..(..((......))..)..))))...........((((((((((.......((.....)).......)))))))))))))))))))))).. (-29.72 = -30.39 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:15 2006