Locus 2597

Sequence ID 2R_DroMel_CAF1
Location 9,168,227 – 9,168,333
Length 106
Max. P 0.999941
window4279

overview

Window 9

Location 9,168,227 – 9,168,333
Length 106
Sequences 5
Columns 106
Reading direction forward
Mean pairwise identity 94.72
Mean single sequence MFE -25.62
Consensus MFE -25.08
Energy contribution -25.08
Covariance contribution 0.00
Combinations/Pair 1.15
Mean z-score -2.40
Structure conservation index 0.98
SVM decision value 4.71
SVM RNA-class probability 0.999941
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9168227 106 + 20766785
UCAAAAUAACACUUAUUAUUGACAUUUUCUAAUUAUUCAACUGUUUAGCAGUGCUUUCGUUUCGCACGAUUAUUGAUUUGUUCAGUGAACUGAAAGCCAGUCAAUG
................(((((((................((((.....))))(((((((.(((((((((........))))...))))).)))))))..))))))) ( -24.30)
>DroSec_CAF1 52607 106 + 1
UCAAAAUAACACUUAUAAUUGGCAUUUUCUAAUUAUUCAACUGUUUAGCAGAGCUUUCGGUUCGCACGAUUACUGAUUUGUUCAGUGAGCUGAAAGCCAGUCAAUG
.................((((((.................(((.....))).(((((((((((((((((........))))...)))))))))))))..)))))). ( -28.60)
>DroSim_CAF1 44934 106 + 1
UCAAAAUAACACUUAUAAUUGGCAUUUUCUAAUUAUUCAACUGUUUAGCAGUGCUUUUGGUUCGCACGAUUAUUGAUUUGUUCAGUGAACUGAAAGCCAGUCAAUG
.................((((((................((((.....))))(((((..((((((((((........))))...))))))..)))))..)))))). ( -27.10)
>DroEre_CAF1 45476 106 + 1
UCAAAAUAACACUUAUAAUUGGCAUUUUCUAAUUAUUCAACUGUUUAUUAGUGCUUCUGGUUCGCACGAUUAUUGAUUUGUUCAGUGAGCUGAAAGCCAGUCAAUG
.................((((((................((((.....))))((((..(((((((((((........))))...)))))))..))))..)))))). ( -21.80)
>DroYak_CAF1 43680 106 + 1
UCAAAAUAACACUUAUAAUUGGCAUUUUCUAAUUAUUCAACUGUUUAUCAGUGCUUCUGGUUCGCACGAUUAUUGAUUUGUUCGGUGAGCUGAAAGCUAGUCAAUG
.................((((((................((((.....))))((((..(((((((.(((.((......)).))))))))))..))))..)))))). ( -26.30)
>consensus
UCAAAAUAACACUUAUAAUUGGCAUUUUCUAAUUAUUCAACUGUUUAGCAGUGCUUUUGGUUCGCACGAUUAUUGAUUUGUUCAGUGAGCUGAAAGCCAGUCAAUG
.................((((((................((((.....))))(((((((((((((((((........))))...)))))))))))))..)))))). (-25.08 = -25.08 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:04 2006