| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 9,137,876 – 9,137,974 |
| Length | 98 |
| Max. P | 0.632935 |
| Location | 9,137,876 – 9,137,974 |
|---|---|
| Length | 98 |
| Sequences | 4 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 82.99 |
| Mean single sequence MFE | -18.55 |
| Consensus MFE | -12.06 |
| Energy contribution | -13.38 |
| Covariance contribution | 1.31 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.76 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.632935 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9137876 98 - 20766785 UUCAUUAGGAAACACUUUAAGAAUUUUAAAAACAAAGGAAGCAACCCAAAUCAAUUGGUCUGCUGUAAAGUGUCUUCCCCACUCAAACUCACUUUGUU .......((((((((((((....................((((..((((.....))))..)))).)))))))).)))).................... ( -18.80) >DroSec_CAF1 12889 82 - 1 UUCAUCAGGAAACACUUUAAGAAUG---------------CCAACCCAAAUCAAUUGGUCUGCUG-AAAGUGUUUUCCCCACUCAAAUUCACUUUGUU .......(((((((((((.((...(---------------((((..........)))))...)).-)))))))))))..................... ( -17.20) >DroEre_CAF1 15452 96 - 1 UUCAUUAGAAAACACUUUAGGAAUGCCA--UGCAAAGGAAGCAACCGAAAUCAAUUGGUCUGCUGGAAAGUCUUUUCCCUACUCAAUCUCACUUUGUU ...................((....)).--.(((((((((((((((((......))))).))))(((((....)))))..........)).)))))). ( -17.70) >DroYak_CAF1 12999 96 - 1 UUCAUUAGGAAACACUUUAAGAAUGCCA--UAGAAAGGAAGCAACCGAAGUCAAUUGGUCUGCUGGAAAGUGUUUUCCCUACUCAAUCUCACUUUGUU .......(((((((((((.......((.--......)).(((((((((......))))).))))..)))))))))))..................... ( -20.50) >consensus UUCAUUAGGAAACACUUUAAGAAUGCCA__UACAAAGGAAGCAACCCAAAUCAAUUGGUCUGCUGGAAAGUGUUUUCCCCACUCAAACUCACUUUGUU .......(((((((((((.....................(((((((((......))))).))))..)))))))))))..................... (-12.06 = -13.38 + 1.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:55 2006