| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 1,649,723 – 1,649,839 |
| Length | 116 |
| Max. P | 0.951377 |
| Location | 1,649,723 – 1,649,825 |
|---|---|
| Length | 102 |
| Sequences | 4 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 84.50 |
| Mean single sequence MFE | -24.60 |
| Consensus MFE | -22.50 |
| Energy contribution | -22.50 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.95 |
| Structure conservation index | 0.91 |
| SVM decision value | 1.33 |
| SVM RNA-class probability | 0.943279 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1649723 102 + 20766785 --------UUUUUAUUAAUCGCAUA---AAAAA--UAAAAUAUUAGUUUCGCCCAACGUGGGGCUCGAACCCACGACCCUGAGAUUAAGAGUCUCAUGCUCUACCGACUGAGCUA --------(((((((.......)))---)))).--.....................((((((.......))))))....((((((.....)))))).((((........)))).. ( -23.00) >DroPse_CAF1 65006 112 + 1 CACAAAAAUAAAUAUUAAUUGGAAA---AAAGAGGAAAAAAUUUAAUUUCGCCCAACGUGGGGCUCGAACCCACGACCCUGAGAUUAAGAGUCUCAUGCUCUACCGACUGAGCUA .........................---...((((......((((((((((.....((((((.......))))))....))))))))))..))))..((((........)))).. ( -25.50) >DroSec_CAF1 35628 102 + 1 --------UUUUUAUUAAUCGUAUA---AGAAA--UAAAAUAUUAAUUUCGCCCAACGUGGGGCUCGAACCCACGACCCUGAGAUUAAGAGUCUCAUGCUCUACCGACUGAGCUA --------.(((((((..((.....---.))))--)))))................((((((.......))))))....((((((.....)))))).((((........)))).. ( -24.20) >DroPer_CAF1 59093 114 + 1 CAGGAAAAUAAAUAA-AAUUGGAAAAAAAAAGAGGAAAAAAUUUAAUUUCGCCCAACGUGGGGCUCGAACCCACGACCCUGAGAUUAAGAGUCUCAUGCUCUACCGACUGAGCUA .(((...........-...............(.((..(((......)))..)))..((((((.......))))))..)))(((((.....)))))..((((........)))).. ( -25.70) >consensus ________UAAAUAUUAAUCGGAAA___AAAAA__AAAAAAAUUAAUUUCGCCCAACGUGGGGCUCGAACCCACGACCCUGAGAUUAAGAGUCUCAUGCUCUACCGACUGAGCUA ........................................................((((((.......))))))....((((((.....)))))).((((........)))).. (-22.50 = -22.50 + 0.00)
| Location | 1,649,746 – 1,649,839 |
|---|---|
| Length | 93 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 81.90 |
| Mean single sequence MFE | -32.68 |
| Consensus MFE | -31.50 |
| Energy contribution | -31.50 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.91 |
| Structure conservation index | 0.96 |
| SVM decision value | 1.41 |
| SVM RNA-class probability | 0.951377 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1649746 93 + 20766785 AAAAUAUUA-GUUUCGCCCAACGUGGGGCUCGAACCCACGACCCUGAGAUUAAGAGUCUCAUGCUCUACCGACUGAGCUAGCCGGGCAGUUGCC-------------------------- .........-.....((((..((((((.......))))))....((((((.....)))))).((((........)))).....)))).......-------------------------- ( -31.50) >DroPse_CAF1 65039 119 + 1 AAAAAUUUA-AUUUCGCCCAACGUGGGGCUCGAACCCACGACCCUGAGAUUAAGAGUCUCAUGCUCUACCGACUGAGCUAGCCGGGCACUUGGUCUUCUCCGUUCCCAUCGCCUAAAUGA ....(((((-.....((((..((((((.......))))))....((((((.....)))))).((((........)))).....))))....((......))............))))).. ( -33.10) >DroSec_CAF1 35651 93 + 1 AAAAUAUUA-AUUUCGCCCAACGUGGGGCUCGAACCCACGACCCUGAGAUUAAGAGUCUCAUGCUCUACCGACUGAGCUAGCCGGGCAGUUGCC-------------------------- .........-.....((((..((((((.......))))))....((((((.....)))))).((((........)))).....)))).......-------------------------- ( -31.50) >DroEre_CAF1 39306 94 + 1 AAAAUAUUUGCUUUCGCCCAACGUGGGGCUCGAACCCACGACCCUGAGAUUAAGAGUCUCAUGCUCUACCGACUGAGCUAGCCGGGCAGUUGCC-------------------------- .........((..(.((((..((((((.......))))))....((((((.....)))))).((((........)))).....)))).)..)).-------------------------- ( -32.50) >DroPer_CAF1 59128 119 + 1 AAAAAUUUA-AUUUCGCCCAACGUGGGGCUCGAACCCACGACCCUGAGAUUAAGAGUCUCAUGCUCUACCGACUGAGCUAGCCGGGCACUUGGUCUUGUCCGUUCCCAUCGCCUAAAUGA ....(((((-.....((((..((((((.......))))))....((((((.....)))))).((((........)))).....))))....(((..((........))..)))))))).. ( -34.80) >consensus AAAAUAUUA_AUUUCGCCCAACGUGGGGCUCGAACCCACGACCCUGAGAUUAAGAGUCUCAUGCUCUACCGACUGAGCUAGCCGGGCAGUUGCC__________________________ ...............((((..((((((.......))))))....((((((.....)))))).((((........)))).....))))................................. (-31.50 = -31.50 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:50 2006