| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 9,131,883 – 9,132,003 |
| Length | 120 |
| Max. P | 0.994448 |
| Location | 9,131,883 – 9,132,003 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 96.49 |
| Mean single sequence MFE | -36.00 |
| Consensus MFE | -33.55 |
| Energy contribution | -34.05 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.83 |
| Structure conservation index | 0.93 |
| SVM decision value | 2.48 |
| SVM RNA-class probability | 0.994448 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9131883 120 + 20766785 AGACCCCGAAAUUAGCCCAGUCACGGCGCCAGCUGAAGCUAUUAAAAAUUGUGAAAUAAUUUCCAAGCACGCUCCAAUGGAGCAAUUGGGGAUUGUCGCGGAGUGUGGCUGCAAUUACUU ............(((((((.((.((((....))))..............(((((..((((..((((....(((((...)))))..))))..))))))))))).)).)))))......... ( -36.70) >DroSec_CAF1 7069 120 + 1 AGACCCCGAAAUUAGCCCAGUCACGCCGCCAGCUGAAGCUAUUAAAAAUUGUGAAAUAAUUUCCAAGCACGCUCCAAUGGAGCAAUUGGGGAUUGUCGCGGAGUGUGGCUGCAAUUACUU .................(((((((((..(((((....)))..........((((..((((..((((....(((((...)))))..))))..)))))))))).)))))))))......... ( -38.20) >DroSim_CAF1 7053 120 + 1 AGACCCCGAAAUUAGCCCAGUCACGCCGCCAGCUGAAGCUAUUAAAAAUUGUGAAAUAAUUUCCAAGCACGCUCCAAUGGAGCAAUUGGGGAUUGUCGCGGAGUGUGGCUGCAAUUACUU .................(((((((((..(((((....)))..........((((..((((..((((....(((((...)))))..))))..)))))))))).)))))))))......... ( -38.20) >DroEre_CAF1 6879 119 + 1 AAAC-CCGAAAUUAGCCCAGUCACGGCGCCAGCUGAAGCUAUUAAAAAUUGUGAAAUAAUUUCCAAGCACGCUCCAAUGGAGCAAUUGGGGAUUGUCGCGGAGUGUGGCUGCAAUUACUU ....-.......(((((((.((.((((....))))..............(((((..((((..((((....(((((...)))))..))))..))))))))))).)).)))))......... ( -36.70) >DroYak_CAF1 7099 119 + 1 AAAC-CCGAAAUUAGCCCAGUCACGGCGCCAGCUGAAGCUAUUAAAAAUUGUGAAAUAAUUUCCAAGCACGCUCCAAUGGAGCAAUUGGGGAUUGUCGCGGAGUGUGGCUGCAAUUACUU ....-.......(((((((.((.((((....))))..............(((((..((((..((((....(((((...)))))..))))..))))))))))).)).)))))......... ( -36.70) >DroAna_CAF1 10170 116 + 1 AUA---CAGAAUUAGCCAAGUCACGGCGCCAGCUGAAGCUAUUAAAAAUUGUGAAAUAAUUUCCAAGCACGCUCCAAUGGAGCAAUCG-GGAUUGUCGCGGAGUGUGGCUGCAAUUACUU ...---......(((((.(((..((((....))))..)))........(((.(((.....))))))(((((((((...)))))..(((-.(.....).))).)))))))))......... ( -29.50) >consensus AGAC_CCGAAAUUAGCCCAGUCACGGCGCCAGCUGAAGCUAUUAAAAAUUGUGAAAUAAUUUCCAAGCACGCUCCAAUGGAGCAAUUGGGGAUUGUCGCGGAGUGUGGCUGCAAUUACUU .................((((((((.(.(((((....)))..........((((..((((((((((....(((((...)))))..)))))))))))))))).)))))))))......... (-33.55 = -34.05 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:53 2006