Locus 2587

Sequence ID 2R_DroMel_CAF1
Location 9,131,741 – 9,131,851
Length 110
Max. P 0.780410
window4266

overview

Window 6

Location 9,131,741 – 9,131,851
Length 110
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 81.48
Mean single sequence MFE -40.43
Consensus MFE -28.53
Energy contribution -30.70
Covariance contribution 2.17
Combinations/Pair 1.14
Mean z-score -1.88
Structure conservation index 0.71
SVM decision value 0.56
SVM RNA-class probability 0.780410
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9131741 110 - 20766785
GCGGA--------GA--CAAUCGCACAUUUGGGAGCCCUUCAAUCCGAUGGGGGCACAGGCACUUGAGGUUAACCCUCGAAUAUGUCUGUCGGUUGAGGGGAUUACCCUGGGUCGUGUGA
..(..--------..--)..(((((((((..((..((((((((.((((((((.((....))..((((((.....)))))).....)))))))))))))))).....))..))).)))))) ( -45.60)
>DroSec_CAF1 6929 108 - 1
CCGGA--------GA--CAAUCGCACAUUUGGGAGCCCUUCAAUCCGAUGGGGGCCCAGGAACUUGAGGUUAACCUUCGAA--UGUCUGUCGGUUGAGGGGAUUUCCCUGGGUCGUGUGA
..(..--------..--)..((((((((((((((.((((((((.(((((((....)).(((..((((((.....)))))).--..))))))))))))))))...)))).)))).)))))) ( -43.50)
>DroSim_CAF1 6913 108 - 1
CCGGA--------GA--CAAUCGCACAUUUGGGAGCCCUUCAAUCCGAUGGGGGCCCAGGCACUUGAGGUUAACCUUCGAA--UGUCUGUCGGUUGAGGGGAUUUCCCUGGGUCGUGUGA
..(..--------..--)..((((((((((((((.((((((((.(((((((....))(((((.((((((.....)))))).--))))))))))))))))))...)))).)))).)))))) ( -48.10)
>DroEre_CAF1 6741 107 - 1
CUGGA--------GA--CAAUCGCACAUUUGGGAGCCCUUCAUUCCGAUGG-GGCCCAGGCACUUGAGGUUAACCUUCGAA--UGUCUGUCGGCUGAGGGGAUUUUCCUGGGUCGUGUGA
.((..--------..--)).(((((((((..(((.(((((((..((....)-)(((((((((.((((((.....)))))).--))))))..))))))))))....)))..))).)))))) ( -46.20)
>DroYak_CAF1 6952 116 - 1
CUGGAUUUGCUGGAA--CAAUCGCACAUUUGGGAGCCCUUCAUUCCGAUGGGGGCCCAGGCACUUGAGGUUAACCUUCGAA--UGUCUGUCGGUUGAGGGGAUUUCCUUGGGUCGUGUGA
(..(.....)..)..--...((((((((..((((.(((((((..(((((((....))(((((.((((((.....)))))).--)))))))))).)))))))...))).)..)).)))))) ( -44.00)
>DroAna_CAF1 10044 88 - 1
UUGGA--------GAACAAAACGCACAUUUGGGAGUCCUUUAAG-----------CCAGACACUUGUGGUUAACCUUUGAA--UGUCAUUUGCUUCUGUGG---------GGU--UGUGA
.....--------..((((..(.((((...((....))...(((-----------(..((((.(((.((....))..))).--))))....)))).)))))---------..)--))).. ( -15.20)
>consensus
CCGGA________GA__CAAUCGCACAUUUGGGAGCCCUUCAAUCCGAUGGGGGCCCAGGCACUUGAGGUUAACCUUCGAA__UGUCUGUCGGUUGAGGGGAUUUCCCUGGGUCGUGUGA
....................(((((((((..((..((((((((.((((........((((((.((((((.....))))))...)))))))))))))))))).....))..))).)))))) (-28.53 = -30.70 +   2.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:52 2006