Locus 2583

Sequence ID 2R_DroMel_CAF1
Location 9,122,265 – 9,122,360
Length 95
Max. P 0.943265
window4262

overview

Window 2

Location 9,122,265 – 9,122,360
Length 95
Sequences 6
Columns 98
Reading direction reverse
Mean pairwise identity 79.21
Mean single sequence MFE -23.68
Consensus MFE -11.35
Energy contribution -12.97
Covariance contribution 1.61
Combinations/Pair 1.24
Mean z-score -2.91
Structure conservation index 0.48
SVM decision value 1.33
SVM RNA-class probability 0.943265
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9122265 95 - 20766785
ACGUAUUGCGAUGGCAGCUG-GUUUGCUUAGCCGAAAAAGUUGGUCU--AAACAAAUGCGAAAGCAACACGUAAAAACAAAAUUGCAAAUAAAUUUUA
.....(((((((........-(((((.((((((((.....)))).))--)).)))))((....))................))))))).......... ( -20.80)
>DroGri_CAF1 11296 73 - 1
ACGUAGCUGGCUGGCAGCUG-----------UGGCAAAAGUUCUAA---ACACACAUACA---ACACCGCA--------AAAUUACGAAUAAAUUCUA
.((((((((.....))))((-----------(((............---...........---...)))))--------....))))........... ( -11.47)
>DroSec_CAF1 10386 95 - 1
ACGUAUUGCGAUGGCAGCUGGGUUUGCUUAGCCGAAAAAGUUGAGC---AAACAAAUGCGAGAGCAACACGUAAAAACAAAAUUGCAAAUAAAUUUUA
((((.((((..(.(((.....(((((((((((.......)))))))---))))...))).)..)))).))))......((((((.......)))))). ( -29.40)
>DroSim_CAF1 11204 95 - 1
ACGUAUUGCGAUGGCAGCUGGGUUUGCUUAGCCGAAAAAGUUGAGC---AAACAAAUGCGAGAGCAACACGUAAAAACAAAAUUGCAAAUAAAUUUUA
((((.((((..(.(((.....(((((((((((.......)))))))---))))...))).)..)))).))))......((((((.......)))))). ( -29.40)
>DroEre_CAF1 10205 94 - 1
ACGUAUUGCGAUGGCAGCUG-GUUUGCUUGGUCGGAAAAGUUGGGC---CGGCAAAUGCGAAAGCAACACGUAAAAACAAAAUUGCAAAUAAAUUUUA
.....(((((((....((((-((..((((........))).)..))---))))...(((....)))...............))))))).......... ( -26.10)
>DroYak_CAF1 10551 97 - 1
ACGUAGUGCGAUGGCAGCUG-GUUUGCUUAGUCGGAAAAGUUGGGCUAGCAGCAAAUGCGAAAGCAACACGUAAAAACAAAAUUGCAAAUAAAUUUUA
..((..((((.((((.((((-((..((((........))).)..)))))).))...(((....))).))))))...))((((((.......)))))). ( -24.90)
>consensus
ACGUAUUGCGAUGGCAGCUG_GUUUGCUUAGCCGAAAAAGUUGGGC___AAACAAAUGCGAAAGCAACACGUAAAAACAAAAUUGCAAAUAAAUUUUA
((((.((((..(.(((..((.....(((((((.......)))))))......))..))).)..)))).)))).......................... (-11.35 = -12.97 +   1.61)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:48 2006