Locus 2582

Sequence ID 2R_DroMel_CAF1
Location 9,116,167 – 9,116,262
Length 95
Max. P 0.719569
window4261

overview

Window 1

Location 9,116,167 – 9,116,262
Length 95
Sequences 5
Columns 107
Reading direction forward
Mean pairwise identity 75.72
Mean single sequence MFE -30.77
Consensus MFE -8.11
Energy contribution -9.87
Covariance contribution 1.76
Combinations/Pair 1.21
Mean z-score -1.80
Structure conservation index 0.26
SVM decision value 0.40
SVM RNA-class probability 0.719569
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9116167 95 + 20766785
UCUCCAUCGGCCUGGUU---UGGCUGCAGC----CCAAAGGGCAGCGAAGAAGGGAUGGCAAAAA---AUAGAUGAAAAUGAAAUCCUUU--UUUGGCGGUCGACGU
......((((((.....---........((----((...)))).((.((((((((((..((....---...........))..)))))))--))).))))))))... ( -30.76)
>DroSec_CAF1 4296 95 + 1
CCUCCGUGGGCCUGGUU---UGGCUGCAGC----CCAAAGGGCAGCGGAGAAGGGAUGGCAA-AA---AUAGAUGAAAAUGAAAUCCUUUU-UUUGGCGCCCGCCGU
.((((((..((((..((---.(((....))----).)).)))).))))))..(((.((.(((-((---(..(((.........)))...))-)))).)))))..... ( -35.00)
>DroSim_CAF1 4285 96 + 1
CCUCCGUCGGCCUGGUU---UGGCUGCAGC----CCAAAGGGCAGCGGAGAAGGGAUGGCAAAAA---AUAGAUGAAAAUGAAAUCCUUUU-UUUGGCGCCCGCCGU
.(((((((((((.....---.)))))..((----((...)))).))))))..(((.((.((((((---(..(((.........)))..)))-)))).)))))..... ( -37.90)
>DroYak_CAF1 4503 87 + 1
CUUCCAACGGCCUGGUU---UGGCUGCAGC----CCAA-------CGGCGAAGGGAAGGCGAAAA---AUAAAUGAAAAUGAAAUCCUU---UUUGGCGGCCGCUGU
....((.(((((..(((---.(((....))----).))-------).(((((((((.........---................)))))---))..))))))).)). ( -22.91)
>DroAna_CAF1 4196 93 + 1
-----UUCGGCCUGGUUUGUUGGCUGGACACCAUCCAAAAGGC---GAAAAA------CCAAAAAAGGAUGAAUGAAAAUGAAAUCCUUUUUUUCGGCGACUGGUGU
-----.((((((.........))))))((((((.......(.(---((((((------......((((((..((....))...))))))))))))).)...)))))) ( -27.30)
>consensus
CCUCCAUCGGCCUGGUU___UGGCUGCAGC____CCAAAGGGCAGCGGAGAAGGGAUGGCAAAAA___AUAGAUGAAAAUGAAAUCCUUUU_UUUGGCGCCCGCCGU
.......(((((.........))))).......................((((((((..((..................))..))))))))...((((....)))). ( -8.11 =  -9.87 +   1.76)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:47 2006