| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 9,097,358 – 9,097,454 |
| Length | 96 |
| Max. P | 0.841008 |
| Location | 9,097,358 – 9,097,454 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 70.82 |
| Mean single sequence MFE | -22.62 |
| Consensus MFE | -15.72 |
| Energy contribution | -15.83 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.11 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.75 |
| SVM RNA-class probability | 0.841008 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9097358 96 + 20766785 UUAAAAGUGAAACCA----UAGUCCUUCAGAUUCCU--UGUCACUUACCUCCUCAGCUUACUCAGUGUGAGCUGGAUGGUGGGGAACUUCUCGCGAAACUUA ......((((.....----.((((.....))))...--.((..((((((..(.((((((((.....)))))))))..))))))..))...))))........ ( -26.20) >DroSec_CAF1 7468 88 + 1 UUAGAAGUGAAACC----------UUUCAGAUGCCU--UGU--CUUACCUCCUCAGCUUGCUCAGCGUGAGCUGGAUGGUGGGGAACUUCUCGCGAAACUUA ..((((((......----------....((((....--.))--))....((((((.(...(.((((....)))))..).))))))))))))........... ( -25.30) >DroSim_CAF1 7725 72 + 1 A--------------------------AAGAUGCCU--UGU--CUUACCUCCUCAGCUUGCUCAGCGUGAGCUGGAUGGUGGGGAACUUCUCGCGAAACUUA .--------------------------(((((....--.))--)))...((((((.(...(.((((....)))))..).))))))................. ( -21.40) >DroEre_CAF1 7640 94 + 1 UCAAAAGUGAAGCCA----UAGUCCUUUAGAUUCGG--AUU--CUUACCUCCUCAGCUUGCUCAGCGUGAGUUGUAUGGUGGGGAACUUCUCGCGAAACUUG ....((((...((..----...(((.........))--)((--((((((....(((((..(.....)..)))))...)))))))).......))...)))). ( -24.30) >DroWil_CAF1 10209 78 + 1 UAAAAACUAAAACC----------------------AAAAA--CUUACCUUCUUAGUUUGCUUAAAGUCAAUUGAAUUUGUGGGAAUUUCUCACGAAAUUUA ..............----------------------.....--.........((((((.((.....)).)))))).((((((((.....))))))))..... ( -11.10) >DroYak_CAF1 7912 98 + 1 UCAAAAGUUAAGCCAAAGUUAGUCCUUCAGAUUCCG--AGU--CUUACCUCCUCAGCUUGCUCAGCGUGAGCUGGAUGGUGGGGAACUUCUCGCGAAACUUA ....(((((..((..(((((((((.....))))...--..(--((((((..(.(((((..(.....)..))))))..))))))))))))...))..))))). ( -27.40) >consensus UCAAAAGUGAAACC__________CUUCAGAUUCCU__AGU__CUUACCUCCUCAGCUUGCUCAGCGUGAGCUGGAUGGUGGGGAACUUCUCGCGAAACUUA ...........................................((((((...(((((((((.....)))))))))..))))))................... (-15.72 = -15.83 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:43 2006