| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 9,095,800 – 9,095,891 |
| Length | 91 |
| Max. P | 0.548355 |
| Location | 9,095,800 – 9,095,891 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 78.08 |
| Mean single sequence MFE | -18.70 |
| Consensus MFE | -8.63 |
| Energy contribution | -9.80 |
| Covariance contribution | 1.17 |
| Combinations/Pair | 1.21 |
| Mean z-score | -2.05 |
| Structure conservation index | 0.46 |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.548355 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9095800 91 + 20766785 UUGCCCGUAUUUUUGGGUUAUCGCCCGGUCGUAUUUGUUUAUAGAGAAAGAGAGAAUUUUUUUUUUUGUCUUUUUUG---ACCUG--ACCACCUGU ..(((((......)))))........(((((((......))).((((((((.((((.......)))).)))))))).---....)--)))...... ( -20.30) >DroSec_CAF1 6206 82 + 1 UUGCCCGUAUUUUUGGGUUAUCGCCCGGUCGUAUUUGUUUAUAGCGAAAGAGAACUCUUUUUCUUUU-----UUUU-------UG--ACCACCUGU ..(((((......)))))........(((((.....((.....))(((((((....)))))))....-----....-------))--)))...... ( -18.40) >DroSim_CAF1 6457 87 + 1 UUGCCCGUAUUUUUGGGUUAUCGCCCGGUCGUAUUUGUUUAUAGAGAAAGAGAACUCUUUUUCUUUUUUUUUUUUU-------UG--ACCACCUGU ..(((((......)))))........(((((...........((((((((((....))))))))))..........-------))--)))...... ( -22.20) >DroEre_CAF1 6331 89 + 1 UUGCCCGUAUUUUUGGGUUAUCGCCCGGUCGUAUUUGUUUAUAGAGAAAGAGAACUCUUU---UU--CGCUUUUUUUCGUGUUUG--ACCACCUGU ..(((((......)))))........(((((.((.((.....((.(((((((....))))---))--).))......)).)).))--)))...... ( -21.20) >DroYak_CAF1 6612 84 + 1 UUGCCCGUAUUUUUGGGUUAUCGCCCGGUCGUAUUUGUUUAUAGAGAAAGAGAACUCUUUUUUUU--CGCUUUUUUU----------ACCACCUGU ..(((((......)))))........(((.(((.........(((((((((....))))))))).--.........)----------)).)))... ( -17.41) >DroAna_CAF1 6454 77 + 1 UU-----UUUUUUUGGGUUAUCGCC-ACCCGUAUUUGUUUAUGGU-AGAGAGAACUCUUUUUUUU--CC----------AGCCACACUCCACCUGU ..-----.......((((.......-)))).....(((...(((.-((((((....))))))...--))----------)...))).......... ( -12.70) >consensus UUGCCCGUAUUUUUGGGUUAUCGCCCGGUCGUAUUUGUUUAUAGAGAAAGAGAACUCUUUUUUUU__CGCUUUUUU_______UG__ACCACCUGU ......((((..((((((....))))))..)))).........(((((((((....)))))))))............................... ( -8.63 = -9.80 + 1.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:42 2006