Locus 2565

Sequence ID 2R_DroMel_CAF1
Location 9,081,724 – 9,081,821
Length 97
Max. P 0.512747
window4227

overview

Window 7

Location 9,081,724 – 9,081,821
Length 97
Sequences 4
Columns 97
Reading direction forward
Mean pairwise identity 86.90
Mean single sequence MFE -27.68
Consensus MFE -23.25
Energy contribution -23.38
Covariance contribution 0.12
Combinations/Pair 1.07
Mean z-score -1.36
Structure conservation index 0.84
SVM decision value -0.04
SVM RNA-class probability 0.512747
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9081724 97 + 20766785
CCACAGAGUCCACAUCCGCUUAACGUAACGAUCGAGGAUCUCGUUAAGAGCAACUGCGACCAAUGUGGAGUGGAGUAGAGCGGCAACACCGCUGGAA
((....(.(((((.(((((((((((....((((...)))).))))))..((....)).......)))))))))).)..(((((.....))))))).. ( -31.50)
>DroSec_CAF1 46494 84 + 1
CCACAGAGUCCACAUCCGUUUAACGUAACGAUCGAGGAUCUCGUUAAGAGCAACUGCAACCA--GUGGAGUGGAGUAGAG-----------CUGGAA
((((..(.(((((.(((.(((((((....((((...)))).)))))))....((((....))--)))))))))).)...)-----------.))).. ( -22.90)
>DroSim_CAF1 48764 84 + 1
CCACAGAGUCCACAUCCGUUUAACGUAACGAUCGAGGAUCUCGUUAAGAGCCACUGCAACCA--GUGGAGUGGAAUAGAG-----------CUGGAA
...(((..(((((.....(((((((....((((...)))).)))))))..((((((....))--)))).)))))......-----------)))... ( -25.10)
>DroEre_CAF1 53903 95 + 1
CCACAGAGUCCACAUCCGUUUAACGUAACGAUCGAGGAUCUCGUUAAGAGCAACUGCAGCCA--CUGGAGUGGAGUGGAGUGGCACCGCCGCUGGAA
((((....(((((.(((.(((((((....((((...)))).))))))).((....)).....--..))))))))))))((((((...)))))).... ( -31.20)
>consensus
CCACAGAGUCCACAUCCGUUUAACGUAACGAUCGAGGAUCUCGUUAAGAGCAACUGCAACCA__GUGGAGUGGAGUAGAG___________CUGGAA
((......(((((.(((.(((((((....((((...)))).))))))).((....)).........))))))))....(((((.....))))))).. (-23.25 = -23.38 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:15 2006