| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 9,077,935 – 9,078,055 |
| Length | 120 |
| Max. P | 0.724618 |
| Location | 9,077,935 – 9,078,055 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 82.39 |
| Mean single sequence MFE | -21.78 |
| Consensus MFE | -14.11 |
| Energy contribution | -14.83 |
| Covariance contribution | 0.72 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.94 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.41 |
| SVM RNA-class probability | 0.724618 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9077935 120 - 20766785 AAACGCAGGCCUAAAAUCAAUAGCCUAAAAACAUACAAGAACUGGUUCUCAAGAAGAAUCACAAUCCGCCUCCAAGAAAUCAGUCAGGCUUAAAGAAAUGGUUCAACUUACCAGGUAAGC ....((..((((....((...(((((................(((((((.....)))))))..............((......)))))))....))...(((.......)))))))..)) ( -20.00) >DroSec_CAF1 42844 110 - 1 AGACGCAGGCCUAAAAUCAAUAGCCAAA---AAUACAAAAACUGGUUCUCAAGAAGAAUCAGAAU-------CAAGGAAUCAGUCAGGCAUAAAGAACUGGCUCAAUUUAACAGGUAAGC ....((..((((................---..........((((((((.....))))))))...-------....((((.((((((..........))))))..))))...))))..)) ( -21.60) >DroSim_CAF1 44651 112 - 1 AAACGCAGGCCAAAAAUCAAUAGCCAAA-AAAAUACAAAAACUGGUUCUCAAGAAGAAUCAGAAU-------CAAGGAAUCAGUCAGGCAUAAAGAACUGGCUCAAUUUAACAGGUGAGC ....((..(((.................-............((((((((.....))))))))...-------....((((.((((((..........))))))..))))....)))..)) ( -20.50) >DroEre_CAF1 50226 112 - 1 -AAUG-----UUAAAAUCAAUAGCCAA--AAUAUACAAAAACUGGUUCUUAGGAAAAAUCACAUACAGCCUCCAAGGAAUCAGUCAGGCAUAAAGAACUGGCUCAGAUUACCAGGUAAGC -....-----....((((...(((((.--...........((((((((((.(((................))).))))))))))..............)))))..))))........... ( -20.26) >DroYak_CAF1 46063 119 - 1 CAAUGCAGGCCUAAAAUCAAUAGCCAAA-AAUGUACAAAAACUGGUUCCUAAGAAAAAUCACAUGCAGCCUCUAAGGAAUCAGUCAGGCAUAAAGAACUGGCUCACAUUACCAGGUAAGC ....((..((((.........(((((..-.((((......((((((((((.(((................))).))))))))))...)))).......))))).........))))..)) ( -26.56) >consensus AAACGCAGGCCUAAAAUCAAUAGCCAAA_AAAAUACAAAAACUGGUUCUCAAGAAGAAUCACAAUC_GCCUCCAAGGAAUCAGUCAGGCAUAAAGAACUGGCUCAAAUUACCAGGUAAGC ....((..((((.........(((((..............(((((((((..........................)))))))))..............))))).........))))..)) (-14.11 = -14.83 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:10 2006