Locus 2558

Sequence ID 2R_DroMel_CAF1
Location 9,075,380 – 9,075,493
Length 113
Max. P 0.745787
window4213

overview

Window 3

Location 9,075,380 – 9,075,493
Length 113
Sequences 5
Columns 113
Reading direction reverse
Mean pairwise identity 91.15
Mean single sequence MFE -47.04
Consensus MFE -40.30
Energy contribution -40.90
Covariance contribution 0.60
Combinations/Pair 1.06
Mean z-score -1.40
Structure conservation index 0.86
SVM decision value 0.46
SVM RNA-class probability 0.745787
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9075380 113 - 20766785
CACAUCCGUGAGGGGCAGCUCGAACACGUGGCUAAUGCCACCCGCGGUGACCAAGCAGGGCAGCGAUAGCACCACGUUGUCCUGGAUUCCGUUUAGGCCCUUCAUGUCCGUGC
(((...((((((((((...........(((((....)))))..((((........((((((((((.........))))))))))....))))....))))))))))...))). ( -46.20)
>DroSec_CAF1 40268 113 - 1
CACAUCCGUGAGGGGCAGCUCAAACACGUGGCUGAUGCCGCCCGAGGUGACCAAGCAGGGCAGCGAUAGCACUACGUUGUCCUGUAUGCCGCUCAGGCCCUUCAUGUCCGUGC
(((...((((((((((...........(((((....))))).(..((((..((.(((((((((((.((....))))))))))))).)).))))..)))))))))))...))). ( -50.00)
>DroSim_CAF1 42084 113 - 1
CACAUCCGUGAGGGGCAGCUCGAACACGUGGCUAAUGCCACCCGAGGUGACCAAGCAGGGCAGCGAUAGCACCACGUUGUCCUGGAUGCCGCUCAGGCCCUUCAUGUCCGUGC
(((...((((((((((..((((.....(((((....))))).))))(((..((..((((((((((.........))))))))))..)).)))....))))))))))...))). ( -48.60)
>DroEre_CAF1 47693 113 - 1
CACAUCCGUGAGGGGCAGCUCGAAGACGUGGCUGAUGCCACCGGCGGUGACCAGGCUGGGCAGCGACAGCACCACGUUGUCCUUGAUGCCGUGCAUUCCCUGCAUAUCGGUGC
(((..((....))((((....((.((((((((((.(((..((((((....)...)))))...))).))))..)))))).)).....))))(((((.....)))))....))). ( -42.90)
>DroYak_CAF1 43221 113 - 1
CACAUCCGUGAGGGGCAGCUCGAACACGUGGCUGAUGCCACCGGCGGUGACCAGGCAGGGCAGCGAUAGCACCACGUUGUCCUUGAUGCCGUUCAUGCCCUGCAUGUCCGUGC
(((...((((.((((((....((((..(((((....))))).((((....).....(((((((((.........)))))))))....))))))).)))))).))))...))). ( -47.50)
>consensus
CACAUCCGUGAGGGGCAGCUCGAACACGUGGCUGAUGCCACCCGCGGUGACCAAGCAGGGCAGCGAUAGCACCACGUUGUCCUGGAUGCCGUUCAGGCCCUUCAUGUCCGUGC
(((...((((((((((.(((.......(((((....)))))..(.(....)).)))(((((((((.........))))))))).............))))))))))...))). (-40.30 = -40.90 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:02 2006