| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 9,058,857 – 9,058,957 |
| Length | 100 |
| Max. P | 0.935740 |
| Location | 9,058,857 – 9,058,957 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 78.75 |
| Mean single sequence MFE | -32.20 |
| Consensus MFE | -19.64 |
| Energy contribution | -21.17 |
| Covariance contribution | 1.53 |
| Combinations/Pair | 1.18 |
| Mean z-score | -2.28 |
| Structure conservation index | 0.61 |
| SVM decision value | 1.25 |
| SVM RNA-class probability | 0.935740 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9058857 100 + 20766785 CAACGUAGUUCCGGCUUUGACGA-----AAGAGCCAUACAAAUCGAGGGAGAUGCGAGUCAUUAGGAGAUGGCUA----------GAAAGGAGCGACACAAGGCCUCAUAUGCGU ..((((((((((((((((.....-----.))))))......(((......)))...(((((((....))))))).----------....)))))((.........))...))))) ( -25.30) >DroSec_CAF1 24407 99 + 1 CAACGUAGUUCCGGCUUUGACGC-----AAGUGCCAUCCAAAUCGAGGGAGAUGCGAGCCAUUAAGAGAUGGCUA----------GAAAGGAGCGGCACAAGGCCUAA-AUGCGU ..(((((.....(((((((((..-----..))(((.(((..(((......)))...(((((((....))))))).----------....)))..))).)))))))...-.))))) ( -36.80) >DroSim_CAF1 26094 100 + 1 CAACGUAGUUCCGGCUUUGACGC-----AAGUGCCAUCCAAAUCGAGGGAGAUGCGAGCCAUUAAGAGAUGGCUA----------GAAAGGAGCGGCACAAGGCCUAAUAUGCGU ..(((((.....(((((((((..-----..))(((.(((..(((......)))...(((((((....))))))).----------....)))..))).))))))).....))))) ( -37.20) >DroEre_CAF1 29901 96 + 1 AGACGUAGUUCCGGCUUUGACGC-----AAGUGCCAUCCAAAUGGUGGGAGAUG---GCCAUACA-AGAUGGCUA----------GAAAGGAGCGGCACAAGGCCUAAUAUGCGU ..(((((.....(((((((((..-----..))(((.((((.....))))...((---(((((...-..)))))))----------.........))).))))))).....))))) ( -34.30) >DroYak_CAF1 25805 97 + 1 AGACGUAGUUCCGGCUUUGACGC-----AAGUGCCAUCCAAAUCGAGGGAGAUG---GCCAAACAAAGAUGGCUA----------GAAAGGAGCGGCACAAGGCCUAAUAUGCGU ..(((((.....(((((((((..-----..))(((.(((...((......))((---((((........))))))----------....)))..))).))))))).....))))) ( -34.50) >DroPer_CAF1 24953 108 + 1 -UGCGUAGUUCCGGCUUUGACGUCAACAAAGAGCUAUCAAAA-AGAGAGCCAG---AGAGAAAGAGAGAGGACUGCAGAGUGGGGGAGAUGAAAGGGCCAAGGCUUAA--UGCGU -.(((((.((((.((((((..(((..(.....(((.((....-.)).)))(..---...).......)..)))..)))))).))))........((((....))))..--))))) ( -25.10) >consensus CAACGUAGUUCCGGCUUUGACGC_____AAGUGCCAUCCAAAUCGAGGGAGAUG__AGCCAUAAAGAGAUGGCUA__________GAAAGGAGCGGCACAAGGCCUAAUAUGCGU ..(((((.....(((((((((.........))(((.(((..(((......)))....(((((......)))))................)))..))).))))))).....))))) (-19.64 = -21.17 + 1.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:35 2006