Locus 2541

Sequence ID 2R_DroMel_CAF1
Location 9,034,293 – 9,034,389
Length 96
Max. P 0.565013
window4183

overview

Window 3

Location 9,034,293 – 9,034,389
Length 96
Sequences 6
Columns 108
Reading direction forward
Mean pairwise identity 84.67
Mean single sequence MFE -41.78
Consensus MFE -31.25
Energy contribution -33.05
Covariance contribution 1.79
Combinations/Pair 1.06
Mean z-score -1.94
Structure conservation index 0.75
SVM decision value 0.06
SVM RNA-class probability 0.565013
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9034293 96 + 20766785
UCGUCCUGCCCGCCUCGGCAUCCGAAU----------CGG--GAACAGAUGCACCAUGCAUGAUGGCCGGGCAGGAUGCGGUCAUCUGGGGUAUUCCAGAGAAUUCCC
.((((((((((((((((((((....((----------((.--...).))).....)))).))).)).))))))))))).((...((((((....)))))).....)). ( -40.70)
>DroSec_CAF1 31 96 + 1
UCGUCCUGCCCGCCUCGGCAUCCGCAU----------CGG--GAACAGAUGUACCAUGCAUGAUGGCCGGGCAGGAUGCGGUCAGCUGGGGGAUUCCAGAGGAAUCCC
.((((((((((((((((((((..((((----------((.--...).)))))...)))).))).)).)))))))))))(((....))).((((((((...)))))))) ( -49.40)
>DroSim_CAF1 30 96 + 1
UCGUCCUGCCCGCCUCGGCAUCCGAAU----------CGG--GAACAGAUGUACCAUGCAUGAUGGCCGGGCAGGAUGCGGUCAGCUGGGGGAUUCCAGAGGAUUCCC
.((((((((((((((((((((....((----------((.--...).))).....)))).))).)).)))))))))))(((....)))((((((((....)))))))) ( -43.00)
>DroEre_CAF1 5564 96 + 1
UCGUCCUGCCCGCCUCGGCAUCCGAAU----------CGG--GAACAGAAGUACCAUGCAUGAUGGCCGGGCAGGAUGCGGUCAUCUGGGGGAUUCCCGAGGAUUCCC
.((((((((((((((((((((((....----------..)--))((....))....))).))).)).)))))))))))(((....)))((((((((....)))))))) ( -40.90)
>DroYak_CAF1 319 96 + 1
UCGUCCUGCCCGCCUCGGCAUCCGAAU----------CGG--GAACAGAAAUACCAUGCAUGAUGGCCGGACAGGAUGCGGUCAUCUGGGGGAUUCCCGAGGAUUCCC
.(((((((((.((((((((((((....----------..)--))..(....)....))).))).))).)).)))))))(((....)))((((((((....)))))))) ( -34.20)
>DroAna_CAF1 5926 96 + 1
UCGUCCUGCCCGCCUCUGCAUCCACAUUCGCGGUGGUCGGUGGCAGGGAUGUGCCAUGCAUGAUGGCUGGGCAGGAUGCCGUCACCUGG------------GAAUCCU
.((((((((((((((((((..((((.......))))...((((((......))))))))).)).))).))))))))))(((.....)))------------....... ( -42.50)
>consensus
UCGUCCUGCCCGCCUCGGCAUCCGAAU__________CGG__GAACAGAUGUACCAUGCAUGAUGGCCGGGCAGGAUGCGGUCAUCUGGGGGAUUCCAGAGGAUUCCC
.(((((((((((((((((((((((.............)))...............)))).))).))).))))))))))(((....)))((((((((....)))))))) (-31.25 = -33.05 +   1.79)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:32 2006