Locus 254

Sequence ID	2R_DroMel_CAF1
Location	1,638,669 – 1,638,784
Length	115
Max. P	0.696557

overview

Window 4

Location	1,638,669 – 1,638,784
Length	115
Sequences	4
Columns	115
Reading direction	reverse
Mean pairwise identity	96.38
Mean single sequence MFE	-33.58
Consensus MFE	-30.71
Energy contribution	-30.53
Covariance contribution	-0.19
Combinations/Pair	1.04
Mean z-score	-1.70
Structure conservation index	0.91
SVM decision value	0.34
SVM RNA-class probability	0.696557
Prediction	RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 1638669 115 - 20766785
AAAUCAAACAUCAGCAACGUGACACACAGACAUAAGACGCCCGUCUAGUCGUGGUCUGUGGAACGCUAGCUCCGCUUUGCCAGGAGCCGGAGACUUUUUCCGCAUCCACAAUAUU
....................(((.(((.(((...((((....)))).)))))))))((((((..((..(((((.........))))).(((((...))))))).))))))..... ( -33.70)
>DroSec_CAF1 24449 115 - 1
AAAUCAAACAUCAGCAACGUGACACACAGACAUAAGACGCCCGUCUAGUCGUGGUCUGUGGAACGCCAGCUCCGCUUUGCCAGGAGCCGGAGACUUUUUCCGCUUCCACAAUAUU
....................(((.(((.(((...((((....)))).)))))))))(((((((.((..(((((.........))))).(((((...))))))))))))))..... ( -35.50)
>DroSim_CAF1 22879 114 - 1
AAAUCAAACAUCAGCAACGUGACACACAGACAUAAGACGCCCGUCUAGUCGUGGUCUGUGGAACGCCAGCUCCGCUUUGCCAGGAGCCGGAGACUU-UUCCGCUUCCAAAAUAUU
.............((((...(((.(((.(((...((((....)))).))))))))).(((((.(....).))))).))))..((((.(((((....-))))).))))........ ( -32.30)
>DroEre_CAF1 27127 115 - 1
AAAUCAAACAUCAGCAACGUGACACACAGACAUCAGACGCCCGUCUAGUCGUCGUCUGUGGAACGCCAGCUCCGCUCUGCCAGGAGCGGGAGACUUUUUCCGCAUCCACAAUAUU
.............((..(((..((((..(((..(((((....)))).)..)))...))))..)))..(((((((((((....))))).)))).))......))............ ( -32.80)
>consensus
AAAUCAAACAUCAGCAACGUGACACACAGACAUAAGACGCCCGUCUAGUCGUGGUCUGUGGAACGCCAGCUCCGCUUUGCCAGGAGCCGGAGACUUUUUCCGCAUCCACAAUAUU
.............((...(((...(((((((....(((.........)))...)))))))...))).(((((((((((....))))).)))).))......))............ (-30.71 = -30.53 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:41 2006