Locus 2536

Sequence ID 2R_DroMel_CAF1
Location 9,026,956 – 9,027,047
Length 91
Max. P 0.850290
window4175

overview

Window 5

Location 9,026,956 – 9,027,047
Length 91
Sequences 6
Columns 91
Reading direction forward
Mean pairwise identity 76.78
Mean single sequence MFE -30.61
Consensus MFE -16.90
Energy contribution -16.90
Covariance contribution 0.00
Combinations/Pair 1.43
Mean z-score -1.94
Structure conservation index 0.55
SVM decision value 0.79
SVM RNA-class probability 0.850290
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9026956 91 + 20766785
CACUGUGGUGCGGCCACCGGCUGCUACUGGUGUUCCUGCCACAUCUACUACAACAUCCGCAGCAGCAGCUUCACCUGCAGCCGCAUCGAAG
..((.(((((((((.....((((((.(.((((((.................)))))).).)))))).((.......)).))))))))).)) ( -32.03)
>DroSec_CAF1 3289 91 + 1
CACUGUGGUGAGGCCACCGGUUGCUACUGGUGUUCCUGCCACAUCUUUUACAACAUCCGCAGCAGCAGCUCCAUCUGCAGCCGUAUCGAAG
...((((((..(..(((((((....)))))))..)..))))))...............((.((.((((......)))).)).))....... ( -29.60)
>DroSim_CAF1 2646 91 + 1
CACUGUGGUGCGGCCACCGGUUGCUACUGGUGUUCCUGCCACAUCUUCUACAACAUCCGCAGCAGCAGCUCCAUCUGCAGCCGCAUCGAAG
..((.((((((((((((((((....)))))))...((((...................))))..((((......)))).))))))))).)) ( -31.81)
>DroEre_CAF1 3316 91 + 1
CACUGUGGUGCGAUCUCCGGCUGCUAAAGGCGUCCCUGCCACAUCUACUAUAACAUCUGCAGCAGCAGCUCCAGCUGUAGCCGCAUCGAAG
..((.(((((((..((.((((((.....((((....))))................((((....))))...)))))).)).))))))).)) ( -27.80)
>DroYak_CAF1 3267 91 + 1
CACUGUGGUACGGUCUCCAGCUGCUAAGAGCGCUCCUGCCACAGCUACUACAACAUCUGCAGCAGCAGCUCCAGCUGUAGCCGCAUCGAAG
..((.((((.(((.((.((((((....(((((((.((((...................)))).))).)))))))))).))))).)))).)) ( -30.71)
>DroAna_CAF1 3134 85 + 1
CACCUUAUUGCGAUCACCGGCG------GGAGCAGCUUCGACCUCUACCAUAUCGGCUUCUCCUGCUGCUACUUCGGUAGCUGGAAGCAAG
.......((((..(((..((((------((((.(((..(((...........)))))).))))))))(((((....))))))))..)))). ( -31.70)
>consensus
CACUGUGGUGCGGCCACCGGCUGCUACUGGUGUUCCUGCCACAUCUACUACAACAUCCGCAGCAGCAGCUCCAUCUGCAGCCGCAUCGAAG
..((.(((((((((.....(((((....(((......)))..................))))).((((......)))).))))))))).)) (-16.90 = -16.90 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:24 2006