Locus 2528

Sequence ID 2R_DroMel_CAF1
Location 8,995,659 – 8,995,756
Length 97
Max. P 0.861250
window4165

overview

Window 5

Location 8,995,659 – 8,995,756
Length 97
Sequences 5
Columns 113
Reading direction forward
Mean pairwise identity 80.35
Mean single sequence MFE -34.20
Consensus MFE -24.66
Energy contribution -24.50
Covariance contribution -0.16
Combinations/Pair 1.05
Mean z-score -1.89
Structure conservation index 0.72
SVM decision value 0.83
SVM RNA-class probability 0.861250
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8995659 97 + 20766785
ACAGUGAAAUGUCGAGUGUCCCGCGGGGACGCAAAGGAUGUCAGCCAGGAUGGCAGGAUGACUGG----------------CUGGCAGGAUGCCGUCAGUGGGCGGUGGAUGU
.((.((...((.((.((((((.(((....)))......((((((((((.............))))----------------)))))))))))))).)).....)).))..... ( -39.32)
>DroSec_CAF1 26022 81 + 1
ACAGUGAAAUGUCGAGUGUCCCGCGGGGACGCAAAGGAUGUCAGCCAGGAUGGCA--------------------------------GGAUGCCGUCAGUGGGCGGUGGAUGU
........(((((.(.((.(((((((.(((((....).))))..))..((((((.--------------------------------....)))))).))))))).).))))) ( -29.70)
>DroSim_CAF1 25981 81 + 1
ACAGUGAAAUGUCGAGUGUCCCGCGGGGACGCAAAGGAUGUCAGCCAGGAUGGCA--------------------------------GGAUGCCGUCAGUGGGCGGUGGAUGU
........(((((.(.((.(((((((.(((((....).))))..))..((((((.--------------------------------....)))))).))))))).).))))) ( -29.70)
>DroEre_CAF1 26446 113 + 1
ACAGUGAAAUGUCGAGUGUCCCGCGGGGACGCAAAGGAUGUCGGGCAGAAUGGCAGGAUGGCAGGAUGGCAGGAUUGCGGGAUGACUGGAUGCCGUCAGUGGGCGGUGGAUGU
..........(((.(((((((((((....)((......(((((.((......))....))))).....))......))))))).))).)))((((((....))))))...... ( -39.10)
>DroYak_CAF1 26982 97 + 1
ACAGUGAAAUGUCGAGUGUCCCCGCGGGACGCAAAGGAUGUCAGGCAGGAUGGCAGGAUGGCAGG----------------AUGACUGGAUGCCGUCAGUGGGCGGUGGGUGU
.((((.(..(((((.(((((((...)))))))......(((((.......)))))...)))))..----------------.).))))...((((((....))))))...... ( -33.20)
>consensus
ACAGUGAAAUGUCGAGUGUCCCGCGGGGACGCAAAGGAUGUCAGCCAGGAUGGCAGGAUG_C_GG_________________UG_C_GGAUGCCGUCAGUGGGCGGUGGAUGU
..........(((..(((((((...)))))))......(((((.......))))).................................)))((((((....))))))...... (-24.66 = -24.50 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:14 2006