| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 8,990,288 – 8,990,402 |
| Length | 114 |
| Max. P | 0.719637 |
| Location | 8,990,288 – 8,990,402 |
|---|---|
| Length | 114 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 83.07 |
| Mean single sequence MFE | -25.58 |
| Consensus MFE | -18.60 |
| Energy contribution | -20.38 |
| Covariance contribution | 1.78 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.06 |
| Structure conservation index | 0.73 |
| SVM decision value | 0.40 |
| SVM RNA-class probability | 0.719637 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8990288 114 - 20766785 UCGAGGUUGUGGUAUGUCAUGCCAUCUUAAUAAUGACAUUUAUUUGUAACGUGUUAAGAUACUAAAUUGCCCCGUCCACAACAUGCAACAAGCAACAUGCAGCACAUAACCAUA ....(((((((...((.((((..(((((((((...(((......)))....))))))))).......................(((.....))).))))))...)))))))... ( -27.30) >DroSec_CAF1 20721 107 - 1 UCGAGGUUGUGGUAUGUCAUGCCAUCUUAAUAAUGACAUUUAUUUGUAACGUGUUAAGAUACUAAAUUGCUCCGUCCACAACAUG-------CAACAUGCUGCACAUAACCAUA ....((((((((((.(.((((..(((((((((...(((......)))....)))))))))......((((...((.....))..)-------))))))))))).)))))))... ( -26.90) >DroSim_CAF1 20413 114 - 1 UCGAGGUUGUGGUAUGUCAUGCCAUCUUAAUAAUGACAUUUAUUUGUAACGUGUUAAGAUACUAAAUUGCCCCGUCCACAACAUGCAACAUGCAACAUGCUGCACAUAACCAUA ....(((((..((((((((((..(((((((((...(((......)))....)))))))))......((((...((.....))..))))))))..))))))..))....)))... ( -27.40) >DroEre_CAF1 20928 108 - 1 UCGAGGUUGUGGUAUGUCAUGCCAUCUUAAUAAUGACAUUUAUUUGUAACGUGUUAAGAUACUAAAUUGCCCCGUCCGU------CCACAUGCAACAUGCAGCACAUAACCAUA ....(((((((...((.((((..(((((((((...(((......)))....)))))))))......((((...((....------..))..))))))))))...)))))))... ( -26.60) >DroYak_CAF1 21552 104 - 1 UGGAGGUUGUGGUAUGUCAUGCCAUCUUAAUAAUGACAUUUAUUUGUAACGUGUUAAGAUACUAAAUUGCCCCG----U------CCACAUGCAACAUGCGGCACAUAACCAUA ....(((((((...((.((((..(((((((((...(((......)))....)))))))))......((((....----.------......))))))))))...)))))))... ( -25.50) >DroAna_CAF1 17576 91 - 1 ----UGCUGCGGCAUGACAUGCCAUCUUAAUAAUGACAUUUAUUUGUAACGUGUUAAGGUACUAAAUUGCCCCUG----------CCACAUGCAACACACAGGAG--------- ----(((((.(((((((((((.......(((((......))))).....))))))).((((......))))..))----------)).)).)))...........--------- ( -19.80) >consensus UCGAGGUUGUGGUAUGUCAUGCCAUCUUAAUAAUGACAUUUAUUUGUAACGUGUUAAGAUACUAAAUUGCCCCGUCCAC______CCACAUGCAACAUGCAGCACAUAACCAUA ....(((((((...((.((((..(((((((((...(((......)))....)))))))))......((((.....................))))))))))...)))))))... (-18.60 = -20.38 + 1.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:11 2006