Locus 2524

Sequence ID 2R_DroMel_CAF1
Location 8,988,047 – 8,988,147
Length 100
Max. P 0.500000
window4161

overview

Window 1

Location 8,988,047 – 8,988,147
Length 100
Sequences 6
Columns 106
Reading direction forward
Mean pairwise identity 81.73
Mean single sequence MFE -31.90
Consensus MFE -15.85
Energy contribution -17.02
Covariance contribution 1.17
Combinations/Pair 1.00
Mean z-score -2.43
Structure conservation index 0.50
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8988047 100 + 20766785
CUUUGG-----GAUUUGGCCAUA-AAACGGCUUGUUGUGUGGCGAGUGCGACUGCCGCCUCGAGGCGUUUUGUGGGCACAGCCCAGAAAACAGAAGAAGAAGAAGA
.(((((-----(...((.(((((-(((((.((((..(.(((((.((.....)))))))).)))).)))))))))).))...))))))................... ( -41.20)
>DroSec_CAF1 18262 97 + 1
UUUUG------GAUUUGGCCAUA-AAACAGCUUGUUGUGUGGCGAGUGCGACUGCCGCCUCUAGGCGUUUUGUGGGCACAGCCCAGAAAACAGAAAGAAAA--AAA
(((((------(.(.((.(((((-((((.(((((..(.(((((.((.....))))))))..)))))))))))))).)).)..)))))).............--... ( -33.90)
>DroSim_CAF1 17872 99 + 1
UUUUG------GAUUUGGCCAUA-AAACAGCUUGUUGUGUGGCGAGUGCGACUGCCGCCUCGAGGCGUUUUGUGGGCACAGCCCAGAAAACAGAAAGAAAAAAAAA
..(((------.(((((.(((((-.(((.....))).)))))))))).)))((..((((....)))(((((.(((((...))))).))))).)..))......... ( -32.30)
>DroEre_CAF1 18732 86 + 1
CUUUG------GAUUUAGCCAUA-AAACAGCUUGUUGUGUGGCGAGUGCGACUG---CCUCAAGGCGUUUUGUGAGCACAGCCCAGAAAAA--------AA--UAA
.((((------(.....((((((-.(((.....))).))))))..((((.((((---((....))))....))..))))...)))))....--------..--... ( -25.50)
>DroYak_CAF1 19279 86 + 1
CUUUG------GAUUUGGCCAUA-AAACAGCUUGUUGUGUGGCGAGUGCGACUG---CCUCGAGGCGUUUUGUAGGCACAGCCCAGAAAAA--------AA--CAA
.((((------(..(((((((((-((((.(((((((....)))))))......(---((....)))))))))).))).))).)))))....--------..--... ( -27.00)
>DroAna_CAF1 16154 98 + 1
CUUUGUUGGCUGUCUCGACCGUAAAAACAGCUUGUUGUGUGGCGAGUGCGACUG---CCUCGAGGCGUUUGCCGGGCACAGCCCAAAAAAAAAAU---CAA--CAA
.((((..(((((((((((((((....((((....))))...))).))((((.((---((....)))).)))))))).))))))))))........---...--... ( -31.50)
>consensus
CUUUG______GAUUUGGCCAUA_AAACAGCUUGUUGUGUGGCGAGUGCGACUG___CCUCGAGGCGUUUUGUGGGCACAGCCCAGAAAAAAGAA____AA__AAA
.................(((.........(((((((....))))))).(((........))).))).((((.(((((...))))).))))................ (-15.85 = -17.02 +   1.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:10 2006