Locus 252

Sequence ID 2R_DroMel_CAF1
Location 1,635,353 – 1,635,443
Length 90
Max. P 0.845109
window539

overview

Window 9

Location 1,635,353 – 1,635,443
Length 90
Sequences 4
Columns 90
Reading direction forward
Mean pairwise identity 94.44
Mean single sequence MFE -25.38
Consensus MFE -25.86
Energy contribution -25.43
Covariance contribution -0.44
Combinations/Pair 1.16
Mean z-score -1.55
Structure conservation index 1.02
SVM decision value 0.77
SVM RNA-class probability 0.845109
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 1635353 90 + 20766785
UUUAAUGCCUUGGCCGAAAAAGAUUUAUAGCAUUUCGCGAUAGACCGUUUUCGGCUUAUUGAGAGCACUUAACAGCAACAGGGCACGCGU
.....(((((((((((((((.(.(((((.((.....)).))))).).)))))))).........((........))..)))))))..... ( -28.00)
>DroSec_CAF1 21157 90 + 1
UUUAAUGCUUUGGCCGAAAAAGAUUUAUAGCAUUUCGCGAUAGACCGUUUUCGGCUUAUUGAGAGCACUUAACAGCAACAGGGCACGCGU
.....(((((((((((((((.(.(((((.((.....)).))))).).)))))))).........((........))..)))))))..... ( -25.20)
>DroSim_CAF1 19589 90 + 1
UUUAAUGCUUUGGCCGAAAAAGAUUUAUAGCAUUUCGCGAUAGACCGUUUUCGGCUUAUUGAGAGCACUUAACAGCAACAGGGCACGCGU
.....(((((((((((((((.(.(((((.((.....)).))))).).)))))))).........((........))..)))))))..... ( -25.20)
>DroEre_CAF1 23677 90 + 1
UUUAAUGCUAUGGCCGAAGAAGAUUUAUAGCAUUCCGCGAUGGCCCGCUUUCGGCUUAUUCAGAGCACUUAGCAGCAACAUGGCACGCGU
.....((((((((((((((..(..((((.((.....)).))))..)..))))))).........((.....)).....)))))))..... ( -23.10)
>consensus
UUUAAUGCUUUGGCCGAAAAAGAUUUAUAGCAUUUCGCGAUAGACCGUUUUCGGCUUAUUGAGAGCACUUAACAGCAACAGGGCACGCGU
.....(((((((((((((((.(.(((((.((.....)).))))).).)))))))).........((........))..)))))))..... (-25.86 = -25.43 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:36 2006