Locus 2519

Sequence ID 2R_DroMel_CAF1
Location 8,968,674 – 8,968,770
Length 96
Max. P 0.505541
window4155

overview

Window 5

Location 8,968,674 – 8,968,770
Length 96
Sequences 6
Columns 99
Reading direction reverse
Mean pairwise identity 84.26
Mean single sequence MFE -22.08
Consensus MFE -16.43
Energy contribution -15.22
Covariance contribution -1.21
Combinations/Pair 1.48
Mean z-score -1.68
Structure conservation index 0.74
SVM decision value -0.06
SVM RNA-class probability 0.505541
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8968674 96 - 20766785
UCUGCGCACUGCGUAGUUCCUUCUGCACUGUUUUUUUCAAGUCAAUCAAACGCUGAUUCAGUGUUUUUAUUGUCUAGACAGA---AAAUUGGUUAAUAA
.((((((...))))))........((...(((((((((.((.((((.((((((((...))))))))..)))).)).)).)))---))))..))...... ( -21.50)
>DroVir_CAF1 13613 93 - 1
UUUGCGAACUUCGAAAUUCUUUUUGCAAGGUCUUUUUGAGGUCUCCCAAGCGCUGAUUUAACGUUUUUAUUGUCUGCAUAAG---AGAUAUG---ACAA
((((.(((((((((((..((((....))))...))))))))).)).))))............(((..((((.(((.....))---))))).)---)).. ( -14.50)
>DroSec_CAF1 15984 95 - 1
UCUGCGCACUGCGUAGUUCCUUUUGCACGGUUUUCUUCAAGUCAAUCAAACGCUGAUUCAGUGUUUUUAUUGUCUA-ACACA---AAAUUGGUUAAUAA
.((((((...))))))...........(((((((.....((.((((.((((((((...))))))))..)))).)).-....)---))))))........ ( -19.90)
>DroSim_CAF1 13177 96 - 1
UCUGCGCACUGCGUAGUUCCUUUUGCACGGUUUUCUUCAAGUCAAUCAAACGCUGAUUCAGUGUUUUUAUUGUCUAGACGGA---AAAUUGGUAAAUAA
.((((((...)))))).....(((((.(((((((((((.((.((((.((((((((...))))))))..)))).)).)).)))---)))))))))))... ( -29.70)
>DroEre_CAF1 13002 99 - 1
UCUGCGCACUGCGUAGUUCCUUUUGCACGGUUUUUUUCAAGUCAAUUAAACGCUGAUUCAGUGUUUUUAUUGUCUAGGCAAAGAAGAAUUGGUUAAUUU
.((((((...))))))...........(((((((((((.((.((((.((((((((...))))))))..)))).)).))....)))))))))........ ( -22.90)
>DroYak_CAF1 12870 96 - 1
UCUGCGCACUGCGUAGUUCCUUUUGCACGGUUUUUUUCAAGUCAAUCAAACGCUGAUUCAGUGUUUUUAUUGUCUAGACAAA---AAAUUGGUUUAUUA
.((((((...))))))...........(((((((((((.((.((((.((((((((...))))))))..)))).)).)).)))---))))))........ ( -24.00)
>consensus
UCUGCGCACUGCGUAGUUCCUUUUGCACGGUUUUUUUCAAGUCAAUCAAACGCUGAUUCAGUGUUUUUAUUGUCUAGACAAA___AAAUUGGUUAAUAA
.((((((...))))))...........(((((((((((.((.((((.((((((((...))))))))..)))).)).)).)))...))))))........ (-16.43 = -15.22 +  -1.21)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:04 2006