Locus 2518

Sequence ID 2R_DroMel_CAF1
Location 8,966,443 – 8,966,542
Length 99
Max. P 0.747010
window4154

overview

Window 4

Location 8,966,443 – 8,966,542
Length 99
Sequences 5
Columns 99
Reading direction forward
Mean pairwise identity 93.12
Mean single sequence MFE -28.12
Consensus MFE -21.90
Energy contribution -22.66
Covariance contribution 0.76
Combinations/Pair 1.10
Mean z-score -1.79
Structure conservation index 0.78
SVM decision value 0.46
SVM RNA-class probability 0.747010
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8966443 99 + 20766785
GGAAAAAGUUAACACAGCGGUAUGGCAACGCUGUUCGUCGAUUUACGUUACUGCAAAGUCGAUUCUUAUCGAUGGUAAACAACAUCGACGGUUUACGAA
.......((.(((((((((.........)))))).(((((((.....(((((.....((((((....))))))))))).....)))))))))).))... ( -28.50)
>DroSec_CAF1 13758 98 + 1
GGAA-AAGUUAACACAGCGGUAUGGCAACUCUGUUCGUCGAUUUACGUUACUGCAAAGUCGAUUCUUAUCGAUGGUAAACAACAUCGACGGUUUACGAA
....-..((.(((..(((((...(....).)))))(((((((.....(((((.....((((((....))))))))))).....)))))))))).))... ( -24.90)
>DroSim_CAF1 10950 98 + 1
GGAA-AAGUUAACACAGCGGUAUGGCAACGCUGUUCGUCGAUUUACGUUACUGCAAAGUCGAUUCUUAUCGAUGGUAAACAACAUCGACGGUUUACGAA
....-..((.(((((((((.........)))))).(((((((.....(((((.....((((((....))))))))))).....)))))))))).))... ( -28.50)
>DroEre_CAF1 10775 99 + 1
GGAAAAAGUUGACAGGCCGGUGUGGCAACGCUGUGCGUCGAUUUACGUUACUGCAAAGUCGAUUCUUAUCGAUGGUAAACAACAUCGACGGUUUACGAA
.......((.(((..((((((((....)))))).))((((((.....(((((.....((((((....))))))))))).....)))))).))).))... ( -29.10)
>DroYak_CAF1 10650 99 + 1
GAAAAAAGGUGGAACGCAGGCGUGGCAACGCUGUGCGUCGAUUUACGUUACUGCAAAGUCGAUUCUUAUCGAUGGUAAACAACAUCGACGGUUUACGAA
........(((((.(((((.(((....))))))))(((((((.....(((((.....((((((....))))))))))).....))))))).)))))... ( -29.60)
>consensus
GGAAAAAGUUAACACAGCGGUAUGGCAACGCUGUUCGUCGAUUUACGUUACUGCAAAGUCGAUUCUUAUCGAUGGUAAACAACAUCGACGGUUUACGAA
.......((.(((((((((.........)))))).(((((((.....(((((.....((((((....))))))))))).....)))))))))).))... (-21.90 = -22.66 +   0.76)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:03 2006