| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 8,965,044 – 8,965,135 |
| Length | 91 |
| Max. P | 0.784517 |
| Location | 8,965,044 – 8,965,135 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 85.14 |
| Mean single sequence MFE | -25.92 |
| Consensus MFE | -18.89 |
| Energy contribution | -19.70 |
| Covariance contribution | 0.81 |
| Combinations/Pair | 1.21 |
| Mean z-score | -3.10 |
| Structure conservation index | 0.73 |
| SVM decision value | 0.57 |
| SVM RNA-class probability | 0.784517 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8965044 91 - 20766785 CGUUGUGCGGGUGUGUGAGUGAUUGAUUGUACA---UACAUAUCUGUACAUAAGUGCAAUUGUUUAUAUUGCACUGCGAGAUACAA-------AAAGUGAU----- (((((((((((((((((.(((........))).---))))))))))))))..((((((((.......)))))))))))........-------........----- ( -29.50) >DroSec_CAF1 12359 91 - 1 CGUUGUGCGGGUGUGUGAGUGAUUGAUUGUACA---UACAUAUCUGUACAUAAGUGCAAUUGUUUAUAUUGCAUUACGAGAUACAA-------AAAGUGAU----- (((((((((((((((((.(((........))).---))))))))))))))..((((((((.......)))))))))))........-------........----- ( -26.90) >DroSim_CAF1 8986 90 - 1 CGUUGUGCGGGUGUGUGAGUGAUUGAUUGUACA---UACAUAUCUGUACAUAAGUGCAAUUGUUUAUAUUGCAUUACGAGAUACAA--------AAGUGAU----- (((((((((((((((((.(((........))).---))))))))))))))..((((((((.......)))))))))))........--------.......----- ( -26.90) >DroEre_CAF1 9323 91 - 1 CGUUGUGCGGGUGUGUGAGUGAUUGAUUGUACA---UACAUAUCUGUACAUAAGUGCAAUUGUUUAUAUUGCACUACGAGAUACAA-------AAAGUGAU----- (((((((((((((((((.(((........))).---))))))))))))))..((((((((.......)))))))))))........-------........----- ( -29.20) >DroYak_CAF1 9171 91 - 1 CGUUGUGCGGGUGUGUGAGUGAUUGAUUGUACA---UGCAUAUCUGUACAUAAGUGCAAUUGUUUAUAUUGCACUGCGAGAUACAA-------AAAGUGAU----- (((((((((((((((((.(((........))).---))))))))))))))..((((((((.......)))))))))))........-------........----- ( -28.50) >DroAna_CAF1 9017 100 - 1 CGGCGGACGUGUGUUUG------UGAUUGUACAAUAAACAUUAAGAUAUAUAAGUGCAAUUGUUUAUAUUGCCAUAGAAGAUACAAAGAUACAAAAGUGAUAGAAA .((((...(((((...(------..(((((((.....................)))))))..).)))))))))................................. ( -14.50) >consensus CGUUGUGCGGGUGUGUGAGUGAUUGAUUGUACA___UACAUAUCUGUACAUAAGUGCAAUUGUUUAUAUUGCACUACGAGAUACAA_______AAAGUGAU_____ ...((((((((((((((......((......))...))))))))))))))..((((((((.......))))))))............................... (-18.89 = -19.70 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:02 2006