Locus 2514

Sequence ID 2R_DroMel_CAF1
Location 8,958,582 – 8,958,684
Length 102
Max. P 0.970213
window4149

overview

Window 9

Location 8,958,582 – 8,958,684
Length 102
Sequences 5
Columns 107
Reading direction forward
Mean pairwise identity 83.46
Mean single sequence MFE -29.54
Consensus MFE -18.37
Energy contribution -20.63
Covariance contribution 2.26
Combinations/Pair 1.04
Mean z-score -3.03
Structure conservation index 0.62
SVM decision value 1.65
SVM RNA-class probability 0.970213
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8958582 102 + 20766785
GUAUUCCUAGCAAUUUUAGCGACCUAGUAGCCCACAGUGCGUU-----UAGCUCACGCACACGAGAAAUCGAGGGUCAUUGUGUUUAAAUUUAAAUUUGAGCACAAA
.........((.......))(((((...........((((((.-----......)))))).(((....))).))))).((((((((((((....)))))))))))). ( -32.00)
>DroSec_CAF1 5927 98 + 1
GUAUUCCUAGCAAUUCUAACGACCUAGUAGCCCACAGUGCAUU-----UAGU----GCACACGAGCAAUCGAGGGUCAUUGUGUUUAAAUUUAAAUUUGUGCACAAA
......((((....((....)).))))..((((...((((((.-----..))----)))).(((....))).))))..((((((.(((((....))))).)))))). ( -26.50)
>DroSim_CAF1 2582 98 + 1
GUAUUCCUAGCAAUUUUAGCGACCUAGUAGCCCACAGUGCGUU-----UAGC----GCACACGAGCAAUCGAGGGUCAUUGUGUUUAAAUUUAAAUUUGAGCACAAA
.........((.......))(((((...........(((((..-----...)----)))).(((....))).))))).((((((((((((....)))))))))))). ( -31.70)
>DroEre_CAF1 2503 88 + 1
GUAUUCCUAGC---------------GUAGCAUACAGUGCAUACAGUCUAGG----GCACUCGAGCAAUCGAGGGUCAUUGUGGUUAAAUUUAAAUUUGAGCACAAA
......(((((---------------(((((((...)))).))).).))))(----((.(((((....))))).))).(((((.((((((....)))))).))))). ( -28.20)
>DroYak_CAF1 2626 98 + 1
GUAUUCCUAGCAAUUCUUACGCCCUAGUAGCCUACAGUGCAUG-----UGGC----GCACUCGAGAAAUCGAGGGUCAGUGUGUUUAAAUUUAAAUUUGAGCACAAA
.....((..((......(((......)))(((.(((.....))-----))))----)).(((((....)))))))....(((((((((((....))))))))))).. ( -29.30)
>consensus
GUAUUCCUAGCAAUUCUAACGACCUAGUAGCCCACAGUGCAUU_____UAGC____GCACACGAGCAAUCGAGGGUCAUUGUGUUUAAAUUUAAAUUUGAGCACAAA
.............................((((...((((................)))).(((....))).))))..((((((((((((....)))))))))))). (-18.37 = -20.63 +   2.26)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:59 2006