| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 8,922,736 – 8,922,856 |
| Length | 120 |
| Max. P | 0.663378 |
| Location | 8,922,736 – 8,922,856 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 85.71 |
| Mean single sequence MFE | -36.43 |
| Consensus MFE | -26.12 |
| Energy contribution | -26.47 |
| Covariance contribution | 0.34 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.14 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.663378 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8922736 120 - 20766785 GCUUGUUUACACCGAUCGUCAAGAAUUUCCCAAAACGUCACAAUCUGAUCUGAAAUGGGUGUGCGUUCGGGAAUUUCUGAACAGAUUGCGCCGCCCUGACCCGCAAUAAGCCAUUAAGCA (((((((.....(((((((..((((.(((((..((((.((((..(...........)..)))))))).))))).))))..)).)))))....((........)))))))))......... ( -30.90) >DroSim_CAF1 168304 117 - 1 GCUUGUUUACAGCGAUCGUUCAGAAUUUCCCA-AACGUCACAAUCCGAUCUGAAAUGGGUGUGCGAUCGGGAAUUUCUGAAAAGAUUG--CCGCCCUGACCCGCACUAAACCAUUAAGCA (((((......((((((.(((((((.(((((.-..((.((((.((((........))))))))))...))))).)))))))..)))))--).((........))..........))))). ( -37.50) >DroYak_CAF1 174035 115 - 1 GCUUGUUUACAGCGAUCGUUCUGAAUUUCCCC-AACGUCGCAAUCCAAUCUGAAAUGGGUGUGCGAUCGGGAAUUUCAGAGAAGAUUG--CCGCCCUGACCUCCAGGUAGCCAUUAGA-- (((........((((((.(((((((.(((((.-...(((((((((((........))))).)))))).))))).)))))))..)))))--)...((((.....)))).))).......-- ( -40.90) >consensus GCUUGUUUACAGCGAUCGUUCAGAAUUUCCCA_AACGUCACAAUCCGAUCUGAAAUGGGUGUGCGAUCGGGAAUUUCUGAAAAGAUUG__CCGCCCUGACCCGCAAUAAGCCAUUAAGCA (((((.......(((((..((((((.(((((....((.((((.((((........))))))))))...))))).))))))...)))))....((........))..........))))). (-26.12 = -26.47 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:44 2006