Locus 25

Sequence ID 2R_DroMel_CAF1
Location 1,193,801 – 1,193,904
Length 103
Max. P 0.955032
window46

overview

Window 6

Location 1,193,801 – 1,193,904
Length 103
Sequences 5
Columns 103
Reading direction forward
Mean pairwise identity 90.19
Mean single sequence MFE -31.58
Consensus MFE -23.78
Energy contribution -26.74
Covariance contribution 2.96
Combinations/Pair 1.09
Mean z-score -2.61
Structure conservation index 0.75
SVM decision value 1.45
SVM RNA-class probability 0.955032
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 1193801 103 + 20766785
GGCUUCGAUCUCAGAAGACCAGCUCUAGUGGUUUUGGAAAGCACUCAGAUCUUGUUUGUGUGUUUUGAAAUGGUUUCUUAAUUAAAUAGCUGCGAUCGAACCC
((.(((((((.((((((((((.(....))))))))..(((((((.(((((...))))).))))))).......................))).))))))))). ( -29.80)
>DroSec_CAF1 10981 91 + 1
GGCUUUGAUCGCAGAAGACCAGCUCUAGUGGUUUUGGAAAGCACUCAGAUCUUGUUUGUGUGUUUCGAAAUGGUGUCUUAAUUAAAUAGCU------------
(((((((((...(((..(((.((....)).((((((((..((((.(((((...))))).))))))))))))))).)))..)))))..))))------------ ( -19.60)
>DroSim_CAF1 8674 103 + 1
GGCUUUGAUCGCAGAAGACCAGCUCUAGUGGUUUUGGAAAGCACUCAGAUCUUGUUUGUGUGUUUCGAAAUGGUUUCUUAAUUAAAUAGCUGCGAUCGAGCCC
(((((.(((((((((((((((.(....)))))))).((((.(((.(((((...))))).))))))).......................))))))))))))). ( -34.70)
>DroEre_CAF1 12119 103 + 1
GGCUUUGAUCGCAGAAGACCAGCUCUAGUGGUUUUGGAAAGCACUCAGAUCUUGUUUGUGUGCUUUGAAAUGGUUUCUUAAUUAAAUAGCUGCGAUCGAGCCC
(((((.(((((((((((((((.(....))))))))..(((((((.(((((...))))).))))))).......................))))))))))))). ( -38.30)
>DroYak_CAF1 7638 103 + 1
GGCUUUGAUCGCAGAAGACCAGCUUUAGUGGUUUUGGAAAGCAGUCAAAUCUUGUUUGGGUAUUUUGAAAUGGUUUUUUAAUUAAAUAUCUGCGAUCGAGCCC
(((((.(((((((((.(((((.(....))))))(((((((((..(((((.(((....)))...)))))....))))))))).......)))))))))))))). ( -35.50)
>consensus
GGCUUUGAUCGCAGAAGACCAGCUCUAGUGGUUUUGGAAAGCACUCAGAUCUUGUUUGUGUGUUUUGAAAUGGUUUCUUAAUUAAAUAGCUGCGAUCGAGCCC
((((.((((((((((((((((.(....))))))))..(((((((.(((((...))))).))))))).......................))))))))))))). (-23.78 = -26.74 +   2.96)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:23:48 2006