Locus 2499

Sequence ID 2R_DroMel_CAF1
Location 8,916,890 – 8,917,010
Length 120
Max. P 0.862319
window4124

overview

Window 4

Location 8,916,890 – 8,917,010
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 98.33
Mean single sequence MFE -42.12
Consensus MFE -39.94
Energy contribution -39.98
Covariance contribution 0.04
Combinations/Pair 1.03
Mean z-score -1.42
Structure conservation index 0.95
SVM decision value 0.83
SVM RNA-class probability 0.862319
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8916890 120 - 20766785
CUUGUCCGUGUAAUUGAUGCGUUAAUCCGCAUAUUGACAGCGGUGCCUGCGGUGGCUUUAUGGAAAUAUGUCCCCAGGCUCAGCCGCAUCGGUACUUCGCGGCCCUGUUGAACGGAUUUG
...((((((.......(((((......))))).(..((((.((.(((((.((.(((..(((....))).)))))))))).).(((((...........))))))))))..)))))))... ( -44.30)
>DroSec_CAF1 161860 120 - 1
CUUGUCCGUGUAAUUGAUUCGUUAAUCCGCAUAUUGACAGCGGUGCCUGCGGUGGCUUUAUGGAAAUAUGUCCCCAGGCUCAGCCGCAUCGGUACUUCGCGGCCCUGUUGAAAGGAUUUG
.....(((((..((((((..((((((......)))))).((((((((((.((.(((..(((....))).))))))))))...)))))))))))....))))).(((......)))..... ( -39.80)
>DroSim_CAF1 162534 120 - 1
CUUGUCCGUGUAAUUGAUGCGUUAAUCCGCAUAUCGACAGCGGUGCCUGCGGUGGCUUUAUGGAAAUAUGUCCCCAGGCUCAGCCGCAUCGGUACUUCGCGGCCCUGUUGAAAGGAUUUG
...((((.........(((((......))))).(((((((.((.(((((.((.(((..(((....))).)))))))))).).(((((...........)))))))))))))..))))... ( -43.30)
>DroEre_CAF1 166092 120 - 1
CUUGUCCGUUUAAUUGAUGCGUUAAUCCGCAUAUUGACAGCGGUGCCUGCGGUGGCUUUAUGGAAAUAUGUCCCCAGGCUCAGCCGCAUCGCUACUUCGCGGCCCUGUUGAAAGGAUUUG
...((((.........(((((......))))).(..(((((((((((((.((.(((..(((....))).))))))))))...))))).((((......))))...)))..)..))))... ( -41.30)
>DroYak_CAF1 168320 120 - 1
CUUGUCCGUGUAAUUGAUGCGUUAAUCCGCAUAUUGACAGCGGUGCCUGCGGUGGCUUUAUGGAAAUAUGUCCCCAGGCUCAGCCGCAUCGGUACUUCGCGGCCCUGUUGAAAGGAUUUG
.....(((((..(((((((((.....((((.........)))).(((((.((.(((..(((....))).)))))))))).....)))))))))....))))).(((......)))..... ( -41.90)
>consensus
CUUGUCCGUGUAAUUGAUGCGUUAAUCCGCAUAUUGACAGCGGUGCCUGCGGUGGCUUUAUGGAAAUAUGUCCCCAGGCUCAGCCGCAUCGGUACUUCGCGGCCCUGUUGAAAGGAUUUG
...((((.........(((((......))))).(((((((.((.(((((.((.(((..(((....))).)))))))))).).(((((...........)))))))))))))..))))... (-39.94 = -39.98 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:35 2006