Locus 2495

Sequence ID 2R_DroMel_CAF1
Location 8,915,101 – 8,915,218
Length 117
Max. P 0.697646
window4116

overview

Window 6

Location 8,915,101 – 8,915,218
Length 117
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 91.84
Mean single sequence MFE -53.65
Consensus MFE -43.84
Energy contribution -43.52
Covariance contribution -0.31
Combinations/Pair 1.09
Mean z-score -1.70
Structure conservation index 0.82
SVM decision value 0.34
SVM RNA-class probability 0.697646
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8915101 117 - 20766785
UCUGGUGGGCGCUGUUGGUGUUCAGUAGUCCUGGCUCCGCCCAGCAGAUCUCCG---UCGAGGAGGAGAAACACCCGGUUGAGGGCAGCGAUAAGUUGCUCAGCUUCAGCCGGGCAGUGG
((((.((((((..((..(..(......)..)..))..)))))).))))(((((.---.......)))))....((((((((((((((((.....)))))))....)))))))))...... ( -56.50)
>DroSec_CAF1 160066 117 - 1
UCUGGUGGGCGCUGAUGGUGUUCAGUAGUCCUGGCUCCGCCCAGCAGAUCUCCG---CCGAGGAGGAGAAGCACCCGGUGGAGGGCAGCGAUAAGUUGCUCAGCUUCAGCCGGGCAGUGG
((((.((((((((((......)))))(((....)))..))))).))))(((((.---(....).)))))....((((((((((((((((.....))))))...))))).)))))...... ( -53.40)
>DroEre_CAF1 164310 117 - 1
UCUGGUGGGCGCUGUUGGUGUUCAGUAGUCCUGGCUACGCGCAGCAGAUCUCCA---GCGAGGAGCAGAAGCAGCCGGCGGAGGGCAGCGAUAAGUUGCUUAGCUUCAGCCGGGCAGUGG
.(((.(.(((((((((..(((((.(((((....))))).(((............---)))..)))))..)))))).(((...(((((((.....))))))).)))...))).).)))... ( -45.30)
>DroYak_CAF1 166436 120 - 1
UCUGGUGGGCGCUGAUGGUGUUCAGCAGUCCUGGCCACGCCCAGCAGAUCUCCACCGGCGAGGAGCAGAAGCAGCCGGUGGAGGGCAGCGACAAGUUGCUCAGCUUCAGCCGGGCAGUGG
......(((((((((......))))).))))...((((((((.((.....(((((((((.....((....)).)))))))))(((((((.....))))))).......)).)))).)))) ( -59.40)
>consensus
UCUGGUGGGCGCUGAUGGUGUUCAGUAGUCCUGGCUACGCCCAGCAGAUCUCCA___GCGAGGAGCAGAAGCACCCGGUGGAGGGCAGCGAUAAGUUGCUCAGCUUCAGCCGGGCAGUGG
((((.(((((((((........)))).((....))...))))).)))).((((........)))).........(((((.(((((((((.....)))))))....)).)))))....... (-43.84 = -43.52 +  -0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:27 2006