Locus 2491

Sequence ID 2R_DroMel_CAF1
Location 8,909,037 – 8,909,148
Length 111
Max. P 0.500000
window4109

overview

Window 9

Location 8,909,037 – 8,909,148
Length 111
Sequences 6
Columns 115
Reading direction reverse
Mean pairwise identity 82.85
Mean single sequence MFE -42.16
Consensus MFE -23.91
Energy contribution -25.55
Covariance contribution 1.64
Combinations/Pair 1.15
Mean z-score -2.33
Structure conservation index 0.57
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8909037 111 - 20766785
----GGAUCAAAUUCGAUUAGUACGCGAUGCAAGUGCCCCUGCUCCACCGGAGCACCCAGAUGGUGCUGCUGAAGAAGCAGAUCCGGCGGAAGGCGAAGGAGUUGCGUCUGCGAA
----.((((......))))....((((((((((.(.((..((((((.((((((((((.....)))))((((.....))))..))))).)))..)))..))).))))))).))).. ( -46.00)
>DroSec_CAF1 153895 111 - 1
----GGAUCAAAUUCAAUCAGUACGCGAUGCAAGUGCCCCUGCUCCACCGGAGCACCCAGAUGGUGCUGCUGAAGAAGCAAAUCCGGCGUAAGGCGAAGGAGUUGCGUCUGCGAA
----...................((((((((((.(.((..((((.(.((((((((((.....)))))((((.....))))..))))).)...))))..))).))))))).))).. ( -40.80)
>DroSim_CAF1 154461 111 - 1
----GGAUCAAAUUCGAUCAGUACGCGAUGCAAGUGCCACUGCUCCACCGGAGCACCCAGAUGGUGCUGCUGAAGAAGCAGAUCCGGCGGAAGGCGAAGGAGUUGCGUCUGCGAA
----.((((......))))....((((((((((.(.((..((((((.((((((((((.....)))))((((.....))))..))))).)))..)))..))).))))))).))).. ( -48.10)
>DroEre_CAF1 157305 111 - 1
----GAAUCAAAUUCGAUCAGUACGCGAUGUAUGUGCCCCUGCUCCACCGGAGCACCCAGAUGGUGCUACUGAAGAGGCAGAUCCGCCGGAAGGCUAAGGAGUUGCGACUGCGAA
----........((((..((((.((((((..........((((..(..(((((((((.....)))))).)))..)..)))).((((((....)))...))))))))))))))))) ( -42.80)
>DroYak_CAF1 160326 111 - 1
----GAAUCAAAUUCGAUCGGUACGCGAUGUAUGUGCCCCUGCUCCACAGGAGCACCCAGAUGGUGCUGCUGAAGAGGCAGAUACGGCGGAAGGCCAAGGAGUUGCGAAUGCGAA
----.............(((((.((((((((((.((((.((......(((.((((((.....)))))).))).)).)))).))))(((.....))).....)))))).)).))). ( -40.40)
>DroAna_CAF1 154093 115 - 1
UAUUGAAAAAAAGAGAAUUGUGUCGAGAUGCAGUUCCCCCUGCUACAUCGCAGCACCCAGAUAACGCUGCUGCGGAAGCAGAUCAAGCGAAAGAGCGAGGAGGUGAGACGGCAGA
..............(((((((((....)))))))))...(((((...((((..(..(.......((((.((((....))))....)))).......)..)..))))...))))). ( -34.84)
>consensus
____GAAUCAAAUUCGAUCAGUACGCGAUGCAAGUGCCCCUGCUCCACCGGAGCACCCAGAUGGUGCUGCUGAAGAAGCAGAUCCGGCGGAAGGCGAAGGAGUUGCGACUGCGAA
............................((((..(((....(((((.((((((((((.....)))))((((.....))))..)))))(....).....))))).)))..)))).. (-23.91 = -25.55 +   1.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:20 2006