Locus 249

Sequence ID 2R_DroMel_CAF1
Location 1,632,585 – 1,632,679
Length 94
Max. P 0.817274
window533

overview

Window 3

Location 1,632,585 – 1,632,679
Length 94
Sequences 4
Columns 101
Reading direction forward
Mean pairwise identity 89.40
Mean single sequence MFE -26.06
Consensus MFE -21.38
Energy contribution -20.38
Covariance contribution -1.00
Combinations/Pair 1.19
Mean z-score -1.81
Structure conservation index 0.82
SVM decision value 0.67
SVM RNA-class probability 0.817274
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 1632585 94 + 20766785
AACUUUUCGUCUCUUUGUG-------UUAUAAGGCAGUAAAACUGGUUUUAAGCCGUACUCAUGCGCCAAAGAGCAAGCGAGACAAGGCGAAAGCUUAGAA
....(((((((((((((((-------(.....(((..(((((....))))).)))........))).)))))))...))))))..((((....)))).... ( -26.02)
>DroSec_CAF1 18387 94 + 1
AACUUUUCGUCUCUUUGUG-------UUAUAAGGCACUAAAACUGGUUUUAAGCCAUACUCAUGCGCCAAAGAGCGAGCGAGACAAGGCGAAAGCUUAGAA
..(((((((.(((((((((-------(..((.(((..(((((....))))).))).)).....))).))))))))))).)))...((((....)))).... ( -25.40)
>DroSim_CAF1 16810 94 + 1
AACUUUUCGUCUCUUUGUG-------UUAUAAGGCACUAAAACUGGUUUUAAGCCGUACUCAUGCGCCAAAGAGCAAGCGAGACAGGGCGAAAGCUUAGAA
....(((((((((((((((-------(.....(((..(((((....))))).)))........))).)))))))...))))))(..(((....)))..).. ( -25.72)
>DroEre_CAF1 20828 101 + 1
AGCAUUUCGCUUCUUUGUGUUAUGUGUUAUAAGGCACUAAAACUGGUUUUAUACCAUACUCAGCCGCCAAAGAGUGAGCGAGACAAGGCGAAAGCUUAGAA
(((.(((((((...((((....((((.((((((((.(.......))))))))).))))(((.(((((......))).)))))))))))))))))))..... ( -27.10)
>consensus
AACUUUUCGUCUCUUUGUG_______UUAUAAGGCACUAAAACUGGUUUUAAGCCAUACUCAUGCGCCAAAGAGCAAGCGAGACAAGGCGAAAGCUUAGAA
....(((((((((((((((........)))..(((........((((.....)))).........)))))))))...))))))..((((....)))).... (-21.38 = -20.38 +  -1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:30 2006