Locus 2489

Sequence ID 2R_DroMel_CAF1
Location 8,905,589 – 8,905,697
Length 108
Max. P 0.863566
window4107

overview

Window 7

Location 8,905,589 – 8,905,697
Length 108
Sequences 6
Columns 109
Reading direction reverse
Mean pairwise identity 96.36
Mean single sequence MFE -29.87
Consensus MFE -27.29
Energy contribution -27.48
Covariance contribution 0.19
Combinations/Pair 1.03
Mean z-score -1.31
Structure conservation index 0.91
SVM decision value 0.84
SVM RNA-class probability 0.863566
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8905589 108 - 20766785
-AUGCACGGAUAUGAGCACCACCAAAUCAGCCGGCUGAGGCGAAUGAAACAUUUGGUUUAAGUGCUAAAUAAAUUCAAGUAAUGAGUUUGCCUCUGUCUGUGGGUGUGC
-((.((((((((..(((((.((((((((((((......)))...)))....))))))....)))))...((((((((.....))))))))....)))))))).)).... ( -30.60)
>DroSec_CAF1 150468 108 - 1
-AUGCACGGAUAUGAGCACCACCAAAUCAGCCGGCUGAGGCGAAUGAAACAUUUGGUUUAAGUGCUAAAUAAAUUCAAGUAAUGAGUUUGCCUCUGUCUGUGGGUGUGC
-((.((((((((..(((((.((((((((((((......)))...)))....))))))....)))))...((((((((.....))))))))....)))))))).)).... ( -30.60)
>DroSim_CAF1 150628 108 - 1
-AUGCACGGAUAUGAGCACCACCAAAUCAGCCGGCUGAGGCGAAUGAAACAUUUGGUUUAAGUGCUAAAUAAAUUCAAGUAAUGAGUUUGCCUCUGUCUGUGGGUGUGG
-((.((((((((..(((((.((((((((((((......)))...)))....))))))....)))))...((((((((.....))))))))....)))))))).)).... ( -30.60)
>DroEre_CAF1 153851 105 - 1
-AUGCACGGAUAUGAGCA---CCAAAUCAGCCGGCUGAGGCGAAUGAAACAUUUGGUUUAAGUGCUAAAUAAAUUCAAGUAAUGAGUUUGCCUCUGUCUGUGGGUGUGC
-..((((((...(((...---.....))).))(((.(((((((((.....(((((((......)))))))....(((.....)))))))))))).))).......)))) ( -30.20)
>DroYak_CAF1 156851 106 - 1
UAUGCAAGGAUAUGAGCA---CCAAAUCAGCCGGCUGAGGCGAAUGAAACAUUUGGUUUAAGUGCUAAAUAAAUUCAAGUAAUGAGUUUGCCUCUGUCUGUGGGUGUGC
...............(((---((......((.(((.(((((((((.....(((((((......)))))))....(((.....)))))))))))).))).)).))))).. ( -29.30)
>DroAna_CAF1 150416 106 - 1
-AUGUACGGAUAUGAGC--CACCAAAUCAGCCGGCUGAGGCGAAUGAAACAUUUGGUUUAAGUGCUAAAUAAAUUCAAGUAAUGAGUUUGCCGCUGUCUGUGGGUGUGU
-((.(((((((...(((--.......((((....))))(((((((.....(((((((......)))))))....(((.....)))))))))))))))))))).)).... ( -27.90)
>consensus
_AUGCACGGAUAUGAGCA_CACCAAAUCAGCCGGCUGAGGCGAAUGAAACAUUUGGUUUAAGUGCUAAAUAAAUUCAAGUAAUGAGUUUGCCUCUGUCUGUGGGUGUGC
.((.((((((((.((...........((((....))))(((((((.....(((((((......)))))))....(((.....)))))))))))))))))))).)).... (-27.29 = -27.48 +   0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:17 2006