Locus 2486

Sequence ID 2R_DroMel_CAF1
Location 8,900,709 – 8,900,801
Length 92
Max. P 0.840745
window4104

overview

Window 4

Location 8,900,709 – 8,900,801
Length 92
Sequences 6
Columns 97
Reading direction forward
Mean pairwise identity 81.44
Mean single sequence MFE -18.08
Consensus MFE -14.15
Energy contribution -15.04
Covariance contribution 0.89
Combinations/Pair 1.06
Mean z-score -1.89
Structure conservation index 0.78
SVM decision value 0.75
SVM RNA-class probability 0.840745
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8900709 92 + 20766785
-----UCCGCAUCGACGCCCCUGCAUUUGACUUUGCCUGUCAAUAUUUGCUUUUGGCUUAACUAGCACAUACAUACAUACAUACUGUGCACGCCCCA
-----...((......(((...(((.(((((.......)))))....)))....))).......(((((...............)))))..)).... ( -19.06)
>DroSec_CAF1 145495 84 + 1
-----UCCGCCUGGACGCCCCUGCAUUUGACUUUGCCUGUCAAUAUUUGCUUUUGGCUUAACUAGCACAUA--------CAUACUGUGCACGCCCCA
-----.......((..(((...(((.(((((.......)))))....)))....))).......(((((..--------.....))))).....)). ( -20.00)
>DroSim_CAF1 145683 84 + 1
-----UCCGCCUGGACGCCCCUGCAUUUGACUUUGCCUGUCAAUAUUUGCUUUUGGCUUAACUAGCACAUA--------CAUACUGUGCACGCCCCA
-----.......((..(((...(((.(((((.......)))))....)))....))).......(((((..--------.....))))).....)). ( -20.00)
>DroEre_CAF1 149151 92 + 1
-----UUCGCCUCGACGCCCCUGCAUUUGACUUUGCCUGUCAAUAUUUGCUUUUGGCUUAACUAGCGCACAUACUCGUACAUACUGUGCACGCCCCA
-----...((......(((...(((.(((((.......)))))....)))....))).......(.(((((.............))))).))).... ( -18.72)
>DroYak_CAF1 152036 89 + 1
CCUUCUCCGCCUCGACGCCCCUGCAUUUGACUUUGCCUGUCAAUAUUUGCUUUUGGCUUAACUAGCACA--------UACAUACUGUGCACGCCCCA
........((......(((...(((.(((((.......)))))....)))....))).......(((((--------.......)))))..)).... ( -19.20)
>DroMoj_CAF1 202313 85 + 1
------CUGCU-UG----CUCCGCAUUUGACUUUGCCUGUCAAUAUUUGCCUUUGGCUUAACUAGAACACACACACACACACUCG-CACUCGCUCUC
------..((.-((----(...(((.(((((.......)))))....))).(((((.....)))))..................)-))...)).... ( -11.50)
>consensus
_____UCCGCCUCGACGCCCCUGCAUUUGACUUUGCCUGUCAAUAUUUGCUUUUGGCUUAACUAGCACAUA______UACAUACUGUGCACGCCCCA
........((......(((...(((.(((((.......)))))....)))....))).......(((((...............)))))..)).... (-14.15 = -15.04 +   0.89)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:14 2006