Locus 2484

Sequence ID 2R_DroMel_CAF1
Location 8,897,311 – 8,897,410
Length 99
Max. P 0.566520
window4102

overview

Window 2

Location 8,897,311 – 8,897,410
Length 99
Sequences 6
Columns 107
Reading direction forward
Mean pairwise identity 70.09
Mean single sequence MFE -30.96
Consensus MFE -5.81
Energy contribution -7.98
Covariance contribution 2.17
Combinations/Pair 1.40
Mean z-score -2.33
Structure conservation index 0.19
SVM decision value 0.07
SVM RNA-class probability 0.566520
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8897311 99 + 20766785
GCAGUUUUAGCCAGCUG---GCGUUUGUUA--UAUUACGG--AAGUCUGUUAGCCAACCUG-GCUAAAUCAGAGUGAGAGGCACGUUCAUGCCUCAAUGCAUCAUAA
((((.(((((((((.((---((........--....((((--....))))..))))..)))-)))))).).......((((((......))))))..)))....... ( -33.34)
>DroVir_CAF1 186789 95 + 1
ACAGUUG---CCG-UUG---CAUAUAACGAACUUUGCGGCGCAAGU-UGUGUGGCAGCAUGUGUUGAAUCAAAGUCA----UGCAUUUAUGGUUCAAUGCAAUGUGU
(((((((---(((-(((---....)))).......(((((....))-)))..)))))).((((((((((((((((..----...)))).)))))))))))).))).. ( -31.00)
>DroSec_CAF1 142149 99 + 1
GCAGUUCUAGCCAGCUG---GAGUUAGCUA--UAUUCUGG--AAGUCUGUUAGCCAUCCUG-GCUAAAUCAGAGUCUGAGGCACGUUCAUGCCUCAAUGCAUCAUAA
(((.((((((..(((((---....))))).--....))))--)).((((((((((.....)-)))))..))))...(((((((......))))))).)))....... ( -31.90)
>DroSim_CAF1 142270 99 + 1
GCAGUUCUAGCCAGCUG---GAGUUAGCUA--UAUUCUGG--AAGUGUGUUAGCCAUCCUG-GCUAAAUCAGAGUCUGAGGCACGUUCAUGCCUCAAUGCAUCAUAA
(((....(((((((...---(.((((((.(--((((....--.))))))))))))...)))-))))..........(((((((......))))))).)))....... ( -31.80)
>DroYak_CAF1 148381 99 + 1
ACACUUCUAGCCAGCUG---CAGUUUGCUU--UAUGCUGG--AAGAAUGUUAGCCAUCCUG-GCUAAAUCAGAGUCUGAGGCACGUUCAUGCCUCAAUGCAUCAUAA
...((((((((.(((..---......))).--...)))))--)))....((((((.....)-)))))....((((.(((((((......)))))))..)).)).... ( -32.70)
>DroAna_CAF1 142000 91 + 1
UGAGUUCUGGCUGGGGGCGAGUCUUGGCCA--C---UUGA--AUGUGUGGUAACCAACCUG-GCUAAAUCAAAGU--------CGCUCAUGGCUCAAUGCAUUGUAA
...((..(((((..((((((.(.(((((((--(---....--....)))))..((.....)-)......)))).)--------)))))..))).))..))....... ( -25.00)
>consensus
GCAGUUCUAGCCAGCUG___GAGUUAGCUA__UAUUCUGG__AAGUCUGUUAGCCAUCCUG_GCUAAAUCAGAGUCUGAGGCACGUUCAUGCCUCAAUGCAUCAUAA
........(((.((((.....)))).)))....................(((((........)))))......((..((((((......))))))...))....... ( -5.81 =  -7.98 +   2.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:12 2006