Locus 2483

Sequence ID 2R_DroMel_CAF1
Location 8,897,000 – 8,897,093
Length 93
Max. P 0.999948
window4100 window4101

overview

Window 0

Location 8,897,000 – 8,897,093
Length 93
Sequences 6
Columns 93
Reading direction forward
Mean pairwise identity 93.05
Mean single sequence MFE -37.87
Consensus MFE -35.98
Energy contribution -36.15
Covariance contribution 0.17
Combinations/Pair 1.00
Mean z-score -3.11
Structure conservation index 0.95
SVM decision value 4.77
SVM RNA-class probability 0.999948
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8897000 93 + 20766785
GUCGGCAGCAAGUGGCCCUUAUAAUGGGCCAAGGCGUAAGUCCAUGUCUGGCUGCCUGUUCACCUGGCUGACUUUCAGCCCACAUUCCACCCA
...((((((...((((((.......))))))((((((......)))))).)))))).........(((((.....)))))............. ( -37.40)
>DroSec_CAF1 141838 93 + 1
GUCGGCAGCAAGUGGCCCUUAUAAUGGGCCAAGGCGUAAGUCCAUGUCUGGCUGCCUGUUCACCUGGCUGACUUUCAGCCCACAUCCCGCCCA
...((((((...((((((.......))))))((((((......)))))).)))))).........(((((.....)))))............. ( -37.40)
>DroSim_CAF1 141962 93 + 1
GUCGGCAGCAAGUGGCCCUUAUAAUGGGCCAAGGCGUAAGUCCAUGUCUGGCUGCCUGUUCACCUGGCUGACUUUCAGCCCACAUCCCACCCA
...((((((...((((((.......))))))((((((......)))))).)))))).........(((((.....)))))............. ( -37.40)
>DroEre_CAF1 145480 93 + 1
GGCGGCAGCAAGUGGCCCUUAUAAUGGGCCAAGGCGUAAGUCCAUGUCUGGCUGCCUGUUCACCUGGCUGCCUUUCAGCCCACAUGCCACCCA
(((((((((...((((((.......))))))((((((......)))))).)))))).........(((((.....))))).....)))..... ( -41.30)
>DroYak_CAF1 148073 93 + 1
GUCGGCAGCAAGUGGCCCUUAUAAUGGGCCAAGGCGUAAGUCCAUGUCUGGCUGCCUGUUCACCUGGCUGACUUUCAGCCCACUGACUCCCCG
(((((((((...((((((.......))))))((((((......)))))).)))))).........(((((.....)))))....)))...... ( -40.30)
>DroAna_CAF1 141672 87 + 1
GUUGGCAGCAAGUGGCCCUUAUAAUGGGCCAAGGCGUAAGUCCAUGUCUGGCUGCCUGUUCACCUGGCUGACUUCCUGCC-A-----CGCCCC
...((((((...((((((.......))))))((((((......)))))).))))))........((((.........)))-)-----...... ( -33.40)
>consensus
GUCGGCAGCAAGUGGCCCUUAUAAUGGGCCAAGGCGUAAGUCCAUGUCUGGCUGCCUGUUCACCUGGCUGACUUUCAGCCCACAUCCCACCCA
...((((((...((((((.......))))))((((((......)))))).)))))).........(((((.....)))))............. (-35.98 = -36.15 +   0.17)

alignment

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secondary structure

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dotplot

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Window 1

Location 8,897,000 – 8,897,093
Length 93
Sequences 6
Columns 93
Reading direction reverse
Mean pairwise identity 93.05
Mean single sequence MFE -36.77
Consensus MFE -33.25
Energy contribution -33.42
Covariance contribution 0.17
Combinations/Pair 1.00
Mean z-score -1.93
Structure conservation index 0.90
SVM decision value 1.91
SVM RNA-class probability 0.982094
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8897000 93 - 20766785
UGGGUGGAAUGUGGGCUGAAAGUCAGCCAGGUGAACAGGCAGCCAGACAUGGACUUACGCCUUGGCCCAUUAUAAGGGCCACUUGCUGCCGAC
...((...((.(((.(((.....)))))).))..)).((((((.((....((.......)).((((((.......)))))))).))))))... ( -35.20)
>DroSec_CAF1 141838 93 - 1
UGGGCGGGAUGUGGGCUGAAAGUCAGCCAGGUGAACAGGCAGCCAGACAUGGACUUACGCCUUGGCCCAUUAUAAGGGCCACUUGCUGCCGAC
..(((((......(((((.....)))))((((....(((((((((....))).))...)))).(((((.......))))))))).)))))... ( -37.40)
>DroSim_CAF1 141962 93 - 1
UGGGUGGGAUGUGGGCUGAAAGUCAGCCAGGUGAACAGGCAGCCAGACAUGGACUUACGCCUUGGCCCAUUAUAAGGGCCACUUGCUGCCGAC
..((..(......(((((.....)))))((((....(((((((((....))).))...)))).(((((.......))))))))).)..))... ( -34.90)
>DroEre_CAF1 145480 93 - 1
UGGGUGGCAUGUGGGCUGAAAGGCAGCCAGGUGAACAGGCAGCCAGACAUGGACUUACGCCUUGGCCCAUUAUAAGGGCCACUUGCUGCCGCC
..(((((((.(..((....(((((.(((..(....).)))(((((....))).))...)))))(((((.......))))).))..)))))))) ( -42.10)
>DroYak_CAF1 148073 93 - 1
CGGGGAGUCAGUGGGCUGAAAGUCAGCCAGGUGAACAGGCAGCCAGACAUGGACUUACGCCUUGGCCCAUUAUAAGGGCCACUUGCUGCCGAC
.......(((.(.(((((.....))))).).)))...((((((.((....((.......)).((((((.......)))))))).))))))... ( -37.00)
>DroAna_CAF1 141672 87 - 1
GGGGCG-----U-GGCAGGAAGUCAGCCAGGUGAACAGGCAGCCAGACAUGGACUUACGCCUUGGCCCAUUAUAAGGGCCACUUGCUGCCAAC
..(((.-----(-(((.....))))))).........((((((.((....((.......)).((((((.......)))))))).))))))... ( -34.00)
>consensus
UGGGUGGGAUGUGGGCUGAAAGUCAGCCAGGUGAACAGGCAGCCAGACAUGGACUUACGCCUUGGCCCAUUAUAAGGGCCACUUGCUGCCGAC
.............(((((.....))))).........((((((.((....((.......)).((((((.......)))))))).))))))... (-33.25 = -33.42 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:11 2006