| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 8,889,165 – 8,889,256 |
| Length | 91 |
| Max. P | 0.520192 |
| Location | 8,889,165 – 8,889,256 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 78.09 |
| Mean single sequence MFE | -27.05 |
| Consensus MFE | -10.91 |
| Energy contribution | -11.30 |
| Covariance contribution | 0.39 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.26 |
| Structure conservation index | 0.40 |
| SVM decision value | -0.03 |
| SVM RNA-class probability | 0.520192 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8889165 91 + 20766785 GCGGCAGGCAGCAGGCAGC-------------UGUAGCAAAGAAGCUGGCAGCUGCACAUAGAAAUAAAUAUUUAUAUGGUCGGCGUCUAUAAAUUGAAUGGCG---------- ((.((.(((.....(((((-------------((((((......))).)))))))).((((.((((....)))).))))))).)).((........))...)).---------- ( -27.90) >DroGri_CAF1 167630 109 + 1 GCUG----CUGCUGGUAGCUAUAUGUUGCCGAUGCCGCC-AAAUAUAGGCAGCUGCACAUGGAAAUAAAUAUUUAUAUGCGCGCCAUCUAUAAAUUGAAAGGCCAGGCAAAAAA ((((----(.....)))))......(((((...(((..(-((.((((((..((.((.((((.((((....)))).)))).))))..))))))..)))...)))..))))).... ( -31.70) >DroSec_CAF1 133945 87 + 1 GCGG----CAGCAGGCAGC-------------UGGAGCAAAGAAGCUGGCAGCUGCACAUAGAAAUAAAUAUUUAUAUGGUCGGCGUCUAUAAAUUGAAUGGCG---------- .(((----(.....(((((-------------((.(((......)))..))))))).((((.((((....)))).)))))))).((((............))))---------- ( -24.80) >DroSim_CAF1 133799 87 + 1 GCGG----CAGCAGGCAGC-------------UGGAGCGAAGAAGCUGGCAGCUGCACAUAGAAAUAAAUAUUUAUAUGGUCGGCGUCUAUAAAUUGAAUGGCG---------- .(((----(.....(((((-------------((.(((......)))..))))))).((((.((((....)))).)))))))).((((............))))---------- ( -25.50) >DroEre_CAF1 137217 90 + 1 GCAGCAGGCGGCAGGCAGC-------------UGAAGCA-AGAAGCUGGCAGCUGCACAUAGAAAUAAAUAUUUAUAUGGGCGGCGUCUAUAAAUUGAAUGGCG---------- ...((..((.((..(((((-------------((.(((.-....)))..))))))).((((.((((....)))).)))).)).)).((........))...)).---------- ( -28.20) >DroYak_CAF1 139319 90 + 1 GCAGCAGGCAGGUGGAGGA-------------AGAAGCU-GGCAGCUGGCAGCUGCACAUAGAAAUAAAUAUUUAUAUGGGCGGCGUCUAUAAAUUGAAUGGCG---------- .((((.(.(((.(......-------------...).))-).).))))((.(((((.((((.((((....)))).)))).))))).((........))...)).---------- ( -24.20) >consensus GCGG____CAGCAGGCAGC_____________UGAAGCA_AGAAGCUGGCAGCUGCACAUAGAAAUAAAUAUUUAUAUGGGCGGCGUCUAUAAAUUGAAUGGCG__________ ((.................................(((......)))(((.((((..((((.((((....)))).))))..))))))).............))........... (-10.91 = -11.30 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:10 2006