Locus 248

Sequence ID 2R_DroMel_CAF1
Location 1,631,642 – 1,631,742
Length 100
Max. P 0.799323
window532

overview

Window 2

Location 1,631,642 – 1,631,742
Length 100
Sequences 4
Columns 102
Reading direction reverse
Mean pairwise identity 87.66
Mean single sequence MFE -17.45
Consensus MFE -13.09
Energy contribution -13.65
Covariance contribution 0.56
Combinations/Pair 1.04
Mean z-score -1.91
Structure conservation index 0.75
SVM decision value 0.61
SVM RNA-class probability 0.799323
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 1631642 100 - 20766785
AUUGCGAAUCAAGCUGGCCAUUAAUUUUGGAGACAAUUAAGAUUCGCCAUGACAAUAAAUCGCAUCUUGAAAAAAAA--AAAAGAUUAAUUGUUUAUAAAAU
...(((((((....((.(((.......)))...)).....)))))))...((((((.((((................--....)))).))))))........ ( -17.05)
>DroSec_CAF1 17444 100 - 1
AUUGCGAAUCAAGAUGCCCAUUAAUUUUGAAGACCAUUAAGAUUCGCUAUGACAAUAAAUCGCAACUUCUAUUAAAA--AAAAGAUUAAUUGUUUAUAAAAU
...(((((((..((((..(.(((....))).)..))))..)))))))(((((((((.((((................--....)))).)))).))))).... ( -16.55)
>DroSim_CAF1 15877 102 - 1
AUUGCGAAUCAAGAUGCCCAUUAAUUUUGGAGACCAUUAAGAUUCGCUGUGACAAUAAAUCGCAACUUGUAUUAAAAAAAAAAGAUUAAUUGUUUAUAAAAU
...(((((((..((((((((.......))).)..))))..)))))))(((((((((.((((......................)))).)))).))))).... ( -18.75)
>DroEre_CAF1 19972 101 - 1
UACGCGAAUCAAAAAAACCAUUAAUUUUGGAGACAAUUAAGAUUGGCCAUGACAAUAAAUCGAAACUUGGACUAAAA-AAAAAGAUUAAUUGUUUCUAAAAU
.......................(((((((((((((((((..(((((((..................))).))))..-.......))))))))))))))))) ( -17.47)
>consensus
AUUGCGAAUCAAGAUGCCCAUUAAUUUUGGAGACAAUUAAGAUUCGCCAUGACAAUAAAUCGCAACUUGUAUUAAAA__AAAAGAUUAAUUGUUUAUAAAAU
...((((((((((((........)))))(....)......)))))))...((((((.((((......................)))).))))))........ (-13.09 = -13.65 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:29 2006