Locus 2479

Sequence ID	2R_DroMel_CAF1
Location	8,887,209 – 8,887,299
Length	90
Max. P	0.775261

overview

Window 3

Location	8,887,209 – 8,887,299
Length	90
Sequences	5
Columns	92
Reading direction	reverse
Mean pairwise identity	93.63
Mean single sequence MFE	-20.70
Consensus MFE	-16.22
Energy contribution	-15.90
Covariance contribution	-0.32
Combinations/Pair	1.14
Mean z-score	-1.82
Structure conservation index	0.78
SVM decision value	0.54
SVM RNA-class probability	0.775261
Prediction	RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8887209 90 - 20766785
UCCGACAUACGGGUUGUGGGCCCAUCAAAUGUUGAUUUCCAUAACAAAUUGAUUUUUGUUUGGAUU--UUUGCAAUGGAUUCAAAUGCAAUU
.(((.....)))((..(((..((((....(((.((..((((.((((((......))))))))))..--)).)))))))..)))...)).... ( -21.20)
>DroSec_CAF1 131986 90 - 1
UCCGACAUACGGGUUGUGUGCCCAUCAAAUGUUGAUUUCCAUAACAAAUUGAUUUUUGUUUGGAUU--UUUGAAAUGGAUUCAAAUGAAAUU
..((((((..((((.....)))).....))))))...((((.((((((......))))))))))..--((((((.....))))))....... ( -19.50)
>DroSim_CAF1 131855 90 - 1
UCCGGCAUACGGGUUGUGUGCCCAUCAAAUGUUGAUUUCCAUAACAAAUUGAUUUUUGUUUGGAUU--UUUGCAAUGGAUUCAAAUGCAAUU
((((((((((.....))))))).......(((.((..((((.((((((......))))))))))..--)).)))..)))............. ( -24.70)
>DroEre_CAF1 135274 92 - 1
UCUGACAUACGGGUUGUGUGCCCAUCAAAUGUUGAUUUCCAUAACAAAUUGAUUUUUGUUUGGUUUUUUUUGCAUUGGAUUGAAAUUCUAUU
..........((((.....))))(((.(((((.((...(((.((((((......)))))))))...))...))))).)))............ ( -17.70)
>DroYak_CAF1 137301 91 - 1
UCUGACAUACGGGUUGUGUGCCCAUCAAAUGUUGAUUUCCAUAACAAAUUGAUUUUUGUUUGGGUU-UUUUGUAAUGGAUUCAAAUGCAAUU
..((.(((..((((.....))))........((((..(((((.(((((..(((((......)))))-.))))).))))).)))))))))... ( -20.40)
>consensus
UCCGACAUACGGGUUGUGUGCCCAUCAAAUGUUGAUUUCCAUAACAAAUUGAUUUUUGUUUGGAUU__UUUGCAAUGGAUUCAAAUGCAAUU
((((((((..((((.....)))).....)))))....((((.((((((......))))))))))............)))............. (-16.22 = -15.90 +  -0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:04 2006