Locus 2474

Sequence ID 2R_DroMel_CAF1
Location 8,878,410 – 8,878,501
Length 91
Max. P 0.593234
window4088

overview

Window 8

Location 8,878,410 – 8,878,501
Length 91
Sequences 5
Columns 104
Reading direction reverse
Mean pairwise identity 84.70
Mean single sequence MFE -25.14
Consensus MFE -16.44
Energy contribution -16.84
Covariance contribution 0.40
Combinations/Pair 1.11
Mean z-score -1.87
Structure conservation index 0.65
SVM decision value 0.12
SVM RNA-class probability 0.593234
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8878410 91 - 20766785
ACU--GUGUUUGUGCACUGCAGAGC--ACUGAAAGACCUCACUAU---------UCACACUACUGGCGGCGCCACCUAGCGACCGCUAGACGCAACUACUUUUC
..(--((((..((((........))--))................---------........((((((((((......))).)))))))))))).......... ( -25.70)
>DroSec_CAF1 123250 95 - 1
ACUGUGUGUUUGUGCACUGCAGAGCGCACUGAAAGACCUCACUAU---------CCACACUACUGGCGGCGCCACCUAGCGACCGCUAGCCGCAACUACUUUUC
...(((((...((((.((....)).))))(((......)))....---------.)))))..((((((((((......))).)))))))............... ( -28.50)
>DroSim_CAF1 123061 86 - 1
ACUGUGUGUUUGUGCACUGCAGAGCGCACUG---------ACUAU---------CCACACUACUGGCGGCGCCACCUAGCGACCGCUAGCCGCAACUACUUUUC
..((((.(((.((((.((....)).)))).)---------))...---------.))))...((((((((((......))).)))))))............... ( -27.80)
>DroEre_CAF1 124736 91 - 1
ACU--GUGUUAGUGCACUUUAGAGC--ACUGAAAGACCUCACUAU---------CCACACUACUGCCAGCGCCACCUAGCGACCGCUAGCCGCAACUACUUUUC
.((--...(((((((........))--))))).))..........---------..............(((....(((((....))))).)))........... ( -19.50)
>DroYak_CAF1 127836 100 - 1
ACU--GUGUUAGUGCACUGUAGAGC--ACUAAGACCCCUCACUAUCUACACUAUCCACAGUACUGCCAGCGCCACCUAGCGACCGCUAGCCGCAACUACUUUUC
(((--((((((((((........))--)))))((....))...............)))))).......(((....(((((....))))).)))........... ( -24.20)
>consensus
ACU__GUGUUUGUGCACUGCAGAGC__ACUGAAAGACCUCACUAU_________CCACACUACUGGCGGCGCCACCUAGCGACCGCUAGCCGCAACUACUUUUC
.......((...(((....(((......)))...............................((((((((((......))).)))))))..)))...))..... (-16.44 = -16.84 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:59 2006