Locus 2473

Sequence ID 2R_DroMel_CAF1
Location 8,877,754 – 8,877,857
Length 103
Max. P 0.563696
window4087

overview

Window 7

Location 8,877,754 – 8,877,857
Length 103
Sequences 6
Columns 103
Reading direction reverse
Mean pairwise identity 92.10
Mean single sequence MFE -24.05
Consensus MFE -20.17
Energy contribution -20.11
Covariance contribution -0.05
Combinations/Pair 1.04
Mean z-score -1.68
Structure conservation index 0.84
SVM decision value 0.06
SVM RNA-class probability 0.563696
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8877754 103 - 20766785
GUAAGUACAUAAAUUUGUGUUUAAAUUCAUUAAUGCCUCCGACUCGGCCUGUAUGGCAUUAAUUGAGCAUUUUAAUGGCGAAAUUACAACGCCUAACUGGCGC
((((...(((.((...(((((((.....(((((((((....((.......))..)))))))))))))))).)).)))......))))..((((.....)))). ( -24.20)
>DroSec_CAF1 122607 103 - 1
GUAAGUACAUAAAUUUGUGUUUAAAUUCAUUAAUGCCUGCGACUCGGCCUGUAUGGCAUUAAUUGAGCAUUUUAAUGGCCAAAUUACAACGCCUAACUGGCGC
((((...(((.((...(((((((.....(((((((((((((........)))).)))))))))))))))).)).)))......))))..((((.....)))). ( -25.90)
>DroSim_CAF1 122407 103 - 1
GUAAGUACAUAAAUUUGUGUUUAAAUUCAUUAAUGCCUGCGACUCGGCCUGUAUGGCAUUAAUUGAGCAUUUUAAUGGCCAAAUUACAACGCCUAACUGGCGC
((((...(((.((...(((((((.....(((((((((((((........)))).)))))))))))))))).)).)))......))))..((((.....)))). ( -25.90)
>DroEre_CAF1 124081 103 - 1
GUAAGUACAUAAAUUUGUGUUUAAAUUCAUUAAUGCCUCCGACUCGCCCUGUAUGGCAUUAAUUGAGCAUUUUAAUGGCCAAAUUACAACGCCUAACUGGCGC
((((...(((.((...(((((((.....(((((((((....((.......))..)))))))))))))))).)).)))......))))..((((.....)))). ( -24.20)
>DroYak_CAF1 127198 103 - 1
GUAAGUACAUAAAUUUGCGUUUAAAUUCAUUAAUGCCUCCGACUCGGCCUGCAUGGCAUUAAUUGAGCAUUUUAAUGGCCAAAUUACAACGCCUAACUGGCGC
((((...(((.((..(((........(((((((((((.(((...))).......)))))))).))))))..)).)))......))))..((((.....)))). ( -22.40)
>DroAna_CAF1 122152 88 - 1
GUAAGUACAUAAAUUUGCGUGUAAAUUCAUUAAUGC---------------UCUGGCAUUAAUUGAGCAUUUUAAUGGCAGAAUUACAACGCCUAACUGGCGC
((((((......)))))).(((((.(((((((((((---------------....))))))))...((.........)).)))))))).((((.....)))). ( -21.70)
>consensus
GUAAGUACAUAAAUUUGUGUUUAAAUUCAUUAAUGCCUCCGACUCGGCCUGUAUGGCAUUAAUUGAGCAUUUUAAUGGCCAAAUUACAACGCCUAACUGGCGC
((((...(((.((..(((........(((((((((((.................)))))))).))))))..)).)))......))))..((((.....)))). (-20.17 = -20.11 +  -0.05)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:58 2006