Locus 2465

Sequence ID 2R_DroMel_CAF1
Location 8,855,070 – 8,855,171
Length 101
Max. P 0.568763
window4071

overview

Window 1

Location 8,855,070 – 8,855,171
Length 101
Sequences 6
Columns 106
Reading direction reverse
Mean pairwise identity 78.22
Mean single sequence MFE -32.67
Consensus MFE -14.27
Energy contribution -16.47
Covariance contribution 2.20
Combinations/Pair 1.22
Mean z-score -2.19
Structure conservation index 0.44
SVM decision value 0.07
SVM RNA-class probability 0.568763
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8855070 101 - 20766785
ACCGGGUUAAGGGUCUUCAAAAAGGGUUUUUAGCGCACAGAGUGCGGUUAGAGCUUUUGAGUGGGGCAACUUGG-----CCUGGUGUGGCGAAUGCUAUUCGAGUU
(((((((((((...(((((..(((((((((.(.(((((...))))).).)))))))))...)))))...)))))-----))))))(((((....)))))....... ( -39.20)
>DroSec_CAF1 99948 100 - 1
ACCGGGUUAAGGGUCUUCAAAAAGGGUUUUUAGCGCACAGAGUGCGGUUAGAGCUUUUGAGUGG-GCAACUUGG-----CCUGGUGUGGCGAAUGUGAUUCGAGUU
(((((((((((.((((.....(((((((((.(.(((((...))))).).)))))))))....))-))..)))))-----))))))....(((((...))))).... ( -36.00)
>DroSim_CAF1 99877 100 - 1
ACCGGGUUAAGGGUCUUCAAAAAGGGUUUUUAGCACACAGAGUGCGGUUAGAGCUUUUGAGUGG-CCAACUUGG-----CCUGGUGUGGCGAAUGUGAUUCGAGUU
(((((((((((((((((((((...((((((..((((.....))))....)))))))))))).))-))..)))))-----))))))....(((((...))))).... ( -35.70)
>DroEre_CAF1 101556 99 - 1
ACCGGGUUAAGGGUCCUCGAAAGGGGUUUCCAGCGCAAAGAGUGCGGUUAGAGCUUUUGAGUGG-GCAACUUGG------CUGGUGUGGCAAAUGUGAUUCGAGUU
..(((((((.(((.((((....))))..))).((((.....)))).((((.(.(..(..(((..-...)))..)------..).).)))).....))))))).... ( -30.50)
>DroYak_CAF1 103784 105 - 1
ACCGGAUUGAGGGUCCUCAGAAAGGGUUUUUAGCGCAAGGAGUGCGGUUAGAGCUUUUGAGUGG-CCAAAUGGUCUGGAUCUGGUGUAGCGAAUGUGAUUCGAGUU
((((((((.((((((((((((...((((((.(.((((.....)))).).)))))))))))).))-)).......)).))))))))....(((((...))))).... ( -33.81)
>DroAna_CAF1 98742 81 - 1
ACCGGGUUAAGGGUCUCCAAAAAAAGGCCUCUCCACAGUAGAAGCCUUU---GCUUUUCAG------AACUU--------CUGGUA--------GUGGUUCGAGGU
.((.......))..............(((((.(((((.((((((..(((---(.....)))------).)))--------))).).--------))))...))))) ( -20.80)
>consensus
ACCGGGUUAAGGGUCUUCAAAAAGGGUUUUUAGCGCACAGAGUGCGGUUAGAGCUUUUGAGUGG_GCAACUUGG_____CCUGGUGUGGCGAAUGUGAUUCGAGUU
(((((((((((.....(((..(((((((((..((((.....))))....)))))))))...))).....))))).....))))))..................... (-14.27 = -16.47 +   2.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:43 2006